Modules

All processing, analysis, and tracking capabilities available in JuSPICE. Click a card for the full module documentation.

Library Structure

See a schematic of the whole repository tree — what ships with JuSPICE, where the sample data lives, and which folders (models, generated images, virtual environments) get created automatically as you install and run it.

I/O & Tracking

Reproducible data loading, metadata persistence, and pipeline history.

Image Preprocessing

Denoising, normalisation, and enhancement for microscopy datasets.

Feature Extraction

Gaussian, Sobel, Gabor, entropy, and texture feature maps.

Clustering

Watershed, SLIC, Felzenszwalb, and Otsu clustering algorithms.

Inpainting

Telea, biharmonic, and deep-learning-based image restoration.

DL-based Image Synthesis

Physics-based and augmentation synthesis (core); DCGAN and Stable Diffusion require [dl].

Segmentation

Particle tracking (Trackpy) is core; U-Net, SAM, and MicroNet require [dl].

Physics-based Image Synthesis

Generate synthetic images from physics-inspired particle and crack primitives.