SIONlib  1.7.7
Scalable I/O library for parallel access to task-local files
sion_generic_buddy.c
1 /****************************************************************************
2 ** SIONLIB http://www.fz-juelich.de/jsc/sionlib **
3 *****************************************************************************
4 ** Copyright (c) 2008-2019 **
5 ** Forschungszentrum Juelich, Juelich Supercomputing Centre **
6 ** **
7 ** See the file COPYRIGHT in the package base directory for details **
8 ****************************************************************************/
9 /*
10  *
11  * \brief Internal Functions(parallel)
12  */
13 
14 #define _XOPEN_SOURCE 700
15 
16 #include <stdlib.h>
17 #include <stdio.h>
18 #include <string.h>
19 #include <unistd.h>
20 
21 #include "sion.h"
22 #include "sion_debug.h"
23 #include "sion_error_handler.h"
24 #include "sion_file.h"
25 #include "sion_filedesc.h"
26 #include "sion_fd.h"
27 #include "sion_metadata.h"
28 #include "sion_internal.h"
29 #include "sion_printts.h"
30 #include "sion_flags.h"
31 
32 #include "sion_buffer.h"
33 
34 #include "sion_filedesc.h"
35 #include "sion_keyvalue.h"
36 
37 #include "sion_generic_internal.h"
39 #include "sion_generic_buddy.h"
40 
41 
63 #define DFUNCTION "_sion_paropen_generic_buddy"
64 int _sion_paropen_generic_buddy(
65  int sid,
66  const char *fname,
67  _sion_flags_store *flags_store,
68  char *prefix,
69  int *numFiles,
70  int *filenumber,
71  sion_int64 *chunksize,
72  sion_int32 *fsblksize,
73  int rank,
74  int ntasks,
75  int *globalrank,
76  FILE **fileptr,
77  _sion_generic_gendata *sion_gendata )
78 {
79  int rc = SION_SUCCESS;
80  int b, capability, pass, buddylevel;
81  sion_int32 file_globalrank;
82  sion_int64 file_chunksize;
83  char *buddy_fn, *nfname=NULL;
84  _sion_filedesc *sion_filedesc;
85  _sion_generic_buddy *buddies, *buddyptr;
86  _sion_generic_apidesc *sion_apidesc;
87 
88  buddylevel = atoi(_sion_flags_get(flags_store,"buddy")->val);
89  if (buddylevel==0) buddylevel=1; /* default */
90 
91  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "allocate memory for %d buddy levels\n", buddylevel));
92 
93  buddies = (_sion_generic_buddy *) malloc(buddylevel * sizeof(_sion_generic_buddy));
94  if (buddies == NULL) {
95  return(_sion_errorprint(SION_NOT_SUCCESS,_SION_ERROR_RETURN,"cannot allocate buddies structure of size %lu (_sion_generic_buddy), aborting ...\n",
96  (unsigned long) sizeof(_sion_generic_buddy)));
97  }
98  buddies->numgroups=0;
99 
100  buddy_fn = calloc(SION_FILENAME_LENGTH+10,1);
101  if (buddy_fn == NULL) {
102  free(buddies);
103  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: cannot allocate temporary memory of size %lu (buddy_fn), aborting ...\n",
104  (unsigned long) SION_FILENAME_LENGTH+10));
105  }
106 
107  /* get pointer to internal datastructures */
108  sion_apidesc=sion_gendata->apidesc;
109 
110  if (flags_store->mask&_SION_FMODE_WRITE) {
111 
112  /* STEP1: WRITE open normal file */
113  nfname=(sion_apidesc->get_multi_filename_cb?sion_apidesc->get_multi_filename_cb:_sion_get_multi_filename)
114  (fname,sion_gendata->filenumber);
115  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "call parallel open of %d files (current name %s)\n",
116  sion_gendata->numfiles, nfname));
117  rc=_sion_paropen_generic_one_file(sid, nfname, flags_store, prefix,
118  &sion_gendata->numfiles, &sion_gendata->filenumber,
119  chunksize, fsblksize,
120  sion_gendata->lrank, sion_gendata->lsize, globalrank,
121  _SION_INTERNAL_FLAG_BUDDY_NORMAL, fileptr, sion_gendata, NULL);
122  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "leave parallel open of %d files in #tasks=%d sid=%d globalrank=%d\n", sion_gendata->numfiles,
123  sion_gendata->lsize, sid, sion_gendata->grank));
124  free(nfname);
125 
126  /* test sid and get internal data structure */
127  if ((rc<0) || (sid<0) || (_sion_vcdtype(sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc = _sion_vcdtovcon(sid))) {
128  free(buddies);
129  free(buddy_fn);
130  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: invalid sion_filedesc %d", sid));
131  }
132 
133  /* store additional data */
134  sion_filedesc->buddies=buddies;
135 
136  capability=sion_apidesc->get_capability_cb(sion_gendata->comm_data_global);
137 
138  /* open buddy files */
139  for(b=0;b<sion_filedesc->buddylevel;b++) {
140  buddyptr=&buddies[b];
141 
142  /* create communicators */
143  buddyptr->buddy_send.commgroup=NULL; buddyptr->buddy_coll.commgroup=NULL;
144  rc=_sion_buddy_map(sion_gendata,capability,b+1,&buddyptr->buddy_send,&buddyptr->buddy_coll);
145 
146  /* file name */
147  sprintf(buddy_fn,"%s_BUDDY_%02d", fname,b);
148 
149  /* open files */
150  for(pass=1;pass<=_SION_BW_SCHED_NUM_PASSES;pass++) {
151 
152  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO pass=%d [grank=%2d] op=%d\n",pass,*globalrank,
153  _sion_buddy_bwsched(buddyptr->buddy_send.groupnum, sion_gendata->numfiles, pass)));
154 
155 
156  switch (_sion_buddy_bwsched(buddyptr->buddy_send.groupnum, sion_gendata->numfiles, pass)) {
157  case _SION_BW_SCHED_ACTIONA:
158  /* parameter */
159  file_globalrank=-1*(*globalrank+1);
160  file_chunksize=0;
161  nfname=(sion_apidesc->get_multi_filename_cb?sion_apidesc->get_multi_filename_cb:_sion_get_multi_filename)
162  (buddy_fn,buddyptr->buddy_coll.filenum);
163  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO call open_one_file COLL [gendata: b=%d grank=%2d, group=%d of %d, lrank=%d of %d] fn=%s (%d)\n",
164  b,*globalrank, buddyptr->buddy_coll.groupnum,sion_gendata->numfiles,
165  buddyptr->buddy_coll.rank, buddyptr->buddy_coll.size,nfname,buddyptr->buddy_coll.filenum));
166  buddyptr->buddy_coll.sid = _sion_newvcd(NULL,SION_FILEDESCRIPTOR);
167  rc=_sion_paropen_generic_one_file(buddyptr->buddy_coll.sid, nfname, flags_store, prefix,
168  &sion_gendata->numfiles, &buddyptr->buddy_coll.filenum,
169  &file_chunksize, fsblksize,
170  buddyptr->buddy_coll.rank,buddyptr->buddy_coll.size, &file_globalrank,
171  _SION_INTERNAL_FLAG_BUDDY_COLL, NULL, sion_gendata,
172  buddyptr);
173  free(nfname);
174  break;
175  case _SION_BW_SCHED_ACTIONB:
176  /* parameter */
177  file_globalrank=*globalrank;
178  file_chunksize=*chunksize;
179  nfname=(sion_apidesc->get_multi_filename_cb?sion_apidesc->get_multi_filename_cb:_sion_get_multi_filename)
180  (buddy_fn,buddyptr->buddy_send.filenum);
181  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO call open_one_file SEND [gendata: b=%d grank=%2d, group=%d of %d, lrank=%d of %d] fn=%s \n",
182  b,*globalrank, buddyptr->buddy_send.groupnum,sion_gendata->numfiles,
183  buddyptr->buddy_send.rank, buddyptr->buddy_send.size,nfname));
184  buddyptr->buddy_send.sid = _sion_newvcd(NULL,SION_FILEDESCRIPTOR);
185  rc=_sion_paropen_generic_one_file(buddyptr->buddy_send.sid, nfname, flags_store, prefix,
186  &sion_gendata->numfiles, &buddyptr->buddy_send.filenum,
187  &file_chunksize, fsblksize,
188  buddyptr->buddy_send.rank,buddyptr->buddy_send.size, &file_globalrank,
189  _SION_INTERNAL_FLAG_BUDDY_SEND, NULL, sion_gendata,
190  buddyptr);
191  free(nfname);
192  break;
193  default:
194  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO no-op [grank=%2d]\n",*globalrank));
195  break;
196  } /* switch */
197  } /* for pass */
198  } /* for buddies */
199 
200  } else if (flags_store->mask&_SION_FMODE_READ) {
201  int filefound, lgroup=*filenumber, root=0, task, tmpsize, group, masterfile_found;
202  sion_int32 filenumber, numfiles, lrank, lsize, file, file_lgroup, myrole, steprank;
203  sion_int32 helpint32=0, numsteps=0, numgroups=0, numreaderinthisfile;
204  sion_int32 *sion_tmpintfield1 = NULL; /* allocated on rank 0 */
205  /* sion_int32 *sion_tmpintfield2 = NULL; */ /* allocated on lranl-0 that has access to master file */
206 
207  int *stepvectorlist[MAXREADSTEPS]; /* to be changed in an dynamic list */
208  int *stepvector, readercount=0, readyflag=0, datafound=0;
209  int stepcount_coll,stepcount_collreader,stepcount_reader,stepcount_reader_rank,stepcount_noreader,stepcount_noreader_rank, groupcounter;
210  int step,fit,newrank;
211  _sion_generic_buddy_info *buddy_info;
212  sion_int32 helpint7[7];
213 
214  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "enter buddy open in read mode\n"));
215 
216  if(sion_gendata->grank==0) {
217  tmpsize=1*sion_gendata->gsize;
218  sion_tmpintfield1 = (sion_int32 *) malloc(tmpsize * sizeof(sion_int32));
219  if (sion_tmpintfield1 == NULL) {
220  free(buddies);
221  free(buddy_fn);
222  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: cannot allocate temporary memory of size %lu (sion_tmpintfield), aborting ...\n",
223  (unsigned long) tmpsize * sizeof(sion_int32)));
224  }
225  }
226 
227  /* Loop1: over all file sets (normal, buddy1, buddy2) until all have found their data chunk */
228  groupcounter=0;
229  for(b=-1; ( (b<buddylevel) && (!readyflag));b++) {
230 
231  /* determine filename and check for existence of master file on each lrank=0 */
232  if(b==-1) sprintf(buddy_fn,"%s", fname);
233  else sprintf(buddy_fn,"%s_BUDDY_%02d", fname,b);
234  nfname=(sion_apidesc->get_multi_filename_cb?sion_apidesc->get_multi_filename_cb:_sion_get_multi_filename)(buddy_fn,0);
235  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY[%2d] start checking buddy level (file=%s)\n",b,nfname));
236 
237  unsigned int apiflag;
238  if (flags_store->mask&_SION_FMODE_POSIX) apiflag=SION_FILE_FLAG_POSIX;
239 #if defined(_SION_SIONFWD)
240  else if (flags_store->mask&_SION_FMODE_SIONFWD) apiflag=SION_FILE_FLAG_SIONFWD;
241 #endif
242  else apiflag=SION_FILE_FLAG_ANSI;
243 
244  filefound=0;
245  if(sion_gendata->lrank==0) {
246  if(_sion_file_stat_file2(nfname, apiflag)) {
247  filefound=1;
248  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "check for existence of file %s --> file found\n",nfname));
249  }
250  }
251 
252  /* distribute info about master file to all others (root=<tasknum> or -1 if file not found) */
253  helpint32=filefound;
254  sion_gendata->apidesc->gatherr_cb(&helpint32, sion_tmpintfield1, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
255  if (sion_gendata->grank == 0) {
256  root=-1;
257  if (sion_tmpintfield1 == NULL) {
258  free(buddies);
259  free(buddy_fn);
260  return(_sion_errorprint(SION_NOT_SUCCESS,_SION_ERROR_ABORT, DFUNCTION ": gatherr_cb returned sion_tmpintfield1 == NULL"));
261  }
262  for(task=0;task<sion_gendata->gsize;task++) {
263  if(sion_tmpintfield1[task]==1) root=task;
264  }
265  helpint32=root;
266  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "after scan master: root for this file is %d #tasks=%d\n",root,sion_gendata->gsize));
267  }
268  sion_gendata->apidesc->bcastr_cb(&helpint32, sion_gendata->comm_data_global, _SION_INT32, 1, 0); root=helpint32;
269  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "root for this file is %d\n",root));
270 
271  /* get mapping from file and distribute it */
272  if(root!=-1) {
273  _sion_generic_buddy_get_and_distribute_info_from_file(sion_gendata,nfname,root, &filenumber, &numfiles, &lrank, &lsize);
274  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY[%d] after read mapping file=%d of %d, lrank=%d of %d\n",b,filenumber, numfiles, lrank, lsize));
275  masterfile_found=1;
276  } else {
277  filenumber=lrank=lsize=-1;
278  masterfile_found=0;
279  }
280  free(nfname);
281 
282  /* numfiles will be defined from from input parameter, other info will be defined on-the-fly */
283  numfiles=*numFiles;
284  DPRINTFP((32, DFUNCTION, sion_gendata->grank, "Info avail: b=%d numfiles=%d root=%d lgroup=%d\n",b,numfiles,root,lgroup));
285 
286  /* Loop2: for each physical file of this file set */
287  for(file=0;( (file<numfiles) && (!readyflag) );file++) {
288 
289  /* check physical file */
290  nfname=(sion_apidesc->get_multi_filename_cb?sion_apidesc->get_multi_filename_cb:_sion_get_multi_filename)(buddy_fn,file);
291  filefound=-1;
292  if(sion_gendata->lrank==0) {
293  if(_sion_file_stat_file2(nfname, apiflag)) {
294  filefound=lgroup;
295  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "check for existence of file %s --> file found\n",nfname));
296  }
297  }
298 
299  /* gather and distribute info (root and lgroup) about file to all others (root=<tasknum> or -1 if file not found) */
300  helpint32=filefound;
301  sion_gendata->apidesc->gatherr_cb(&helpint32, sion_tmpintfield1, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
302  if (sion_gendata->grank == 0) {
303  root=-1;
304  for(task=0;task<sion_gendata->gsize;task++) {
305  if(sion_tmpintfield1[task]>-1) {
306  root=task;
307  file_lgroup=sion_tmpintfield1[task];
308  }
309  }
310  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "after scan one file: root for this file is %d file_lgroup=%d\n",root,file_lgroup));
311  }
312  if (sion_gendata->grank == 0) helpint32=root;
313  sion_gendata->apidesc->bcastr_cb(&helpint32, sion_gendata->comm_data_global, _SION_INT32, 1, 0); root=helpint32;
314  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "root for this file is %d\n",root));
315 
316  if(root>=0) {
317  /* file found */
318 
319  if(!masterfile_found) {
320  /* get avail info from file: lrank/lsize for local tasks */
321  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY[%d] befre read globalranks file=%d of %d, lrank=%d of %d\n",
322  b, filenumber, numfiles, lrank, lsize));
323  _sion_generic_buddy_get_and_distribute_info_from_one_file(sion_gendata, nfname, root, &filenumber, &numfiles, &lrank, &lsize);
324  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY[%d] after read globalranks file=%d of %d, lrank=%d of %d\n",
325  b, filenumber, numfiles, lrank, lsize));
326  }
327 
328  /* bcast lgroup */
329  if (sion_gendata->grank == 0) helpint32=file_lgroup;
330  sion_gendata->apidesc->bcastr_cb(&helpint32, sion_gendata->comm_data_global, _SION_INT32, 1, 0); file_lgroup=helpint32;
331  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "file_lgroup for this file is %d\n",file_lgroup));
332 
333  /* determine my role for this file */
334  myrole=SION_ROLE_NONE; /* not acting on that file */
335  if((filenumber==file) && (!datafound)) {
336  datafound=1; /* fantastic ... */
337  if(sion_gendata->grank==root) myrole=SION_ROLE_COLLECTOR_READER; /* collector and reader */
338  else myrole=SION_ROLE_READER; /* reader */
339  } else {
340  if(sion_gendata->grank==root) myrole=SION_ROLE_COLLECTOR; /* collector */
341  else if(file_lgroup==lgroup) myrole=SION_ROLE_NOREADER; /* task on the same lgroup but not collector */
342  }
343 
344  /* collect on rank 0 info about each task acting on this file */
345  helpint32=myrole;
346  sion_gendata->apidesc->gatherr_cb(&helpint32, sion_tmpintfield1, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
347 
348  /* check if at least one tasks needs data */
349  if(sion_gendata->grank == 0) {
350  numreaderinthisfile=0;
351  if (sion_tmpintfield1 == NULL) {
352  return(_sion_errorprint(SION_NOT_SUCCESS,_SION_ERROR_ABORT, DFUNCTION ": gatherr_cb returned sion_tmpintfield1 == NULL"));
353  }
354  for(task=0; ( (task<sion_gendata->gsize) ) ;task++)
355  if ( (sion_tmpintfield1[task]==SION_ROLE_COLLECTOR_READER) || (sion_tmpintfield1[task]==SION_ROLE_READER) ) numreaderinthisfile++;
356  }
357  sion_gendata->apidesc->bcastr_cb(&numreaderinthisfile, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
358 
359  if (numreaderinthisfile>0) {
360 
361  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "myrole for file %s is %s\n",nfname,_sion_buddy_role_to_str(myrole)));
362 
363  /* check for step in which the group can be created */
364  if (sion_gendata->grank == 0) {
365  /* check in existing steps if group can created there */
366  fit=0;
367  for(step=0; ( (step<numsteps) && (fit==0) ) ;step++) {
368  stepvector=stepvectorlist[step];
369  fit=1;
370  for(task=0; ( (task<sion_gendata->gsize) && (fit==1) ) ;task++) {
371  if(sion_tmpintfield1[task]!=SION_ROLE_NONE) {
372  if(stepvector[task]!=SION_ROLE_NONE) fit=0;
373  }
374  }
375  }
376  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY STEP assign: after scanning %d steps fit=%d\n",numsteps,fit));
377  if(fit==0) {
378  /* no space in available steps, create a new one */
379  stepvector = (int *) malloc(sion_gendata->gsize * sizeof(int));
380  if (stepvector == NULL) {
381  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: cannot allocate temporary memory of size %lu (stepvector), aborting ...\n",
382  (unsigned long) sion_gendata->gsize * sizeof(int)));
383  }
384  for(task=0; (task<sion_gendata->gsize);task++) stepvector[task]=SION_ROLE_NONE;
385  numsteps++;step++;
386  stepvectorlist[numsteps-1]=stepvector;
387  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY STEP assign: allocating new step %d\n",numsteps-1));
388  }
389  /* store roles in stepvector and analyse group */
390  stepcount_coll=stepcount_collreader=stepcount_reader=stepcount_noreader=0;
391  for(task=0; (task<sion_gendata->gsize);task++) {
392  if(sion_tmpintfield1[task]!=SION_ROLE_NONE) {
393  stepvector[task]=sion_tmpintfield1[task];
394  if (sion_tmpintfield1[task]==SION_ROLE_COLLECTOR) stepcount_coll++;
395  if (sion_tmpintfield1[task]==SION_ROLE_READER) {readercount++;stepcount_reader++;}
396  if (sion_tmpintfield1[task]==SION_ROLE_COLLECTOR_READER) {readercount++;stepcount_collreader++;}
397  if (sion_tmpintfield1[task]==SION_ROLE_NOREADER) stepcount_noreader++;
398  }
399  }
400  /* DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY STEP assign: stepcount_coll=%d stepcount_collreader=%d stepcount_reader=%d stepcount_noreader=%d\n", */
401  /* stepcount_coll,stepcount_collreader, stepcount_reader, stepcount_noreader)); */
402  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY STEP assign: group assigned to step %d (tasks with no data: %d)\n",numsteps-1,sion_gendata->gsize-readercount));
403  if(sion_gendata->gsize-readercount==0) readyflag=1;
404 
405  /* calculate ranks */
406  stepcount_noreader_rank = stepcount_coll;
407  stepcount_reader_rank = stepcount_noreader_rank+stepcount_noreader;
408  for(task=0; (task<sion_gendata->gsize);task++) {
409  /*DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY STEP assign1: task %d stepcount_reader_rank=%d stepcount_noreader_rank=%d %s\n",
410  task, stepcount_reader_rank, stepcount_noreader_rank,_sion_buddy_role_to_str(sion_tmpintfield1[task])));*/
411  if(sion_tmpintfield1[task]==SION_ROLE_NONE) newrank=-1;
412  if(sion_tmpintfield1[task]==SION_ROLE_COLLECTOR) newrank=0;
413  if(sion_tmpintfield1[task]==SION_ROLE_COLLECTOR_READER) newrank=stepcount_reader_rank++;
414  if(sion_tmpintfield1[task]==SION_ROLE_NOREADER) newrank=stepcount_noreader_rank++;
415  if(sion_tmpintfield1[task]==SION_ROLE_READER) newrank=stepcount_reader_rank++;
416  sion_tmpintfield1[task]=newrank;
417  /* DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY STEP assign2: rank %d to task %d stepcount_reader_rank=%d stepcount_noreader_rank=%d\n",
418  sion_tmpintfield1[task],task, stepcount_reader_rank, stepcount_noreader_rank));*/
419  }
420  } /* if(rank==0) --> stepvector handling */
421 
422  /* scatter rank info to tasks */
423  sion_gendata->apidesc->scatterr_cb(sion_tmpintfield1, &steprank, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
424 
425 
426  /* bcast info ), ready flag, size, collsize, to_index */
427  if (sion_gendata->grank == 0) {
428 
429  helpint7[0]=step-1; /* step number */
430  helpint7[1]=readyflag; /* readyflag */
431  helpint7[2]=stepcount_coll+stepcount_collreader+stepcount_reader+stepcount_noreader; /* size */
432  helpint7[3]=stepcount_collreader+stepcount_reader; /* collsize */
433  helpint7[4]=stepcount_coll+stepcount_noreader; /* from_index */
434  helpint7[5]=stepcount_coll+stepcount_noreader+stepcount_collreader+stepcount_reader-1; /* to_index */
435  helpint7[6]=groupcounter++; /* unique Id of group */
436  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "define group #%d (step=%d, readyflag=%d, size=%d, collsize=%d, from=%d, to=%d) \n",
437  helpint7[6], helpint7[0], helpint7[1], helpint7[2], helpint7[3], helpint7[4], helpint7[5]));
438  }
439  sion_gendata->apidesc->bcastr_cb(helpint7, sion_gendata->comm_data_global, _SION_INT32, 7, 0);
440  readyflag=helpint7[1];
441 
442  /* create new data structure for storing info about group if task is acting in this group */
443  if(myrole!=SION_ROLE_NONE) {
444  buddy_info = (_sion_generic_buddy_info *) malloc(sizeof(_sion_generic_buddy_info));
445  if (buddy_info == NULL) {
446  free(buddies);
447  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: cannot allocate temporary memory of size %lu (buddy_info), aborting ...\n",
448  (unsigned long) sizeof(_sion_generic_buddy_info)));
449  }
450  buddies->groups[buddies->numgroups]=buddy_info; buddies->numgroups++;
451  buddy_info->groupid=helpint7[6];
452  buddy_info->stepnum=helpint7[0];
453  buddy_info->rank=steprank;
454  buddy_info->size=helpint7[2];
455  buddy_info->commgroup=NULL; /* will be created later */
456  buddy_info->collsize=helpint7[3];
457  buddy_info->from_index=helpint7[4];
458  buddy_info->to_index=helpint7[5];
459  buddy_info->myrole=myrole;
460  buddy_info->bnum=b;
461  if( (myrole==SION_ROLE_READER) || (myrole==SION_ROLE_COLLECTOR_READER)) {
462  buddy_info->filelrank=lrank;
463  } else {
464  buddy_info->filelrank=-1;
465  }
466  buddy_info->filenum=file;
467  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "create group #%d (step=%d, rank=%d, size=%d, collsize=%d, from=%2d, to=%2d) (bnum=%2d file# %2d) with role %s \n",
468  buddy_info->groupid, buddy_info->stepnum, buddy_info->rank, buddy_info->size, buddy_info->collsize,
469  buddy_info->from_index, buddy_info->to_index, buddy_info->bnum, buddy_info->filenum, _sion_buddy_role_to_str(buddy_info->myrole)));
470 
471  } /* create group */
472  } /* (numreaderinthisfile>0) */
473  } /* if (file found on one of the lgroups) */
474  } /* end of loop over physical files of file set */
475  } /* end of loop over file sets (buddies) */
476 
477  if(!readyflag) {
478  /* some tasks could not find their data */
479  free(buddies);
480  free(buddy_fn);
481  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: cannot open file, not all files available"));
482  }
483 
484  /* bcast max. number of steps */
485  sion_gendata->apidesc->bcastr_cb(&numsteps, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
486  buddies->numsteps=numsteps;
487 
488  /* bcast max. number of groups */
489  if (sion_gendata->grank == 0) numgroups=groupcounter;
490  sion_gendata->apidesc->bcastr_cb(&numgroups, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
491 
492  /* build commgroups */
493  for(step=0;step<numsteps;step++) {
494  /* search for group with this step */
495  group=-1;
496  for(b=0; ( (b<buddies->numgroups) && (group==-1) ); b++ ) {
497 
498  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "check group #%d of %d in stepnum=%d step=%d\n",b, buddies->numgroups, buddies->groups[b]->stepnum,step));
499  if (buddies->groups[b]->stepnum==step) group=b;
500  }
501 
502  if(group!=-1) {
503  /* create group for step */
504  buddy_info=buddies->groups[group];
505  rc=sion_gendata->apidesc->create_lcg_cb(&buddy_info->commgroup,sion_gendata->comm_data_global,
506  sion_gendata->grank,sion_gendata->gsize,
507  buddy_info->rank,buddy_info->size,
508  buddy_info->groupid,numgroups);
509  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_created active [grank=%2d of %2d, group=%2d of %2d, lrank=%2d of %2d]\n",
510  sion_gendata->grank,sion_gendata->gsize, buddy_info->groupid,numgroups, buddy_info->rank,buddy_info->size));
511  } else {
512  /* nothing to do in this step, create dummy comm */
513  void *dummycommgroup=NULL;
514  rc=sion_gendata->apidesc->create_lcg_cb(&dummycommgroup,sion_gendata->comm_data_global,
515  sion_gendata->grank,sion_gendata->gsize,
516  0,1,
517  -1,numgroups);
518  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_created dummy [grank=%2d of %2d, group=%2d of %2d, lrank=%2d of %2d]\n",
519  sion_gendata->grank,sion_gendata->gsize,
520  -1,numgroups,
521  0,1 ));
522  }
523 
524 
525  if(group!=-1) {
526  /* open file */
527  buddy_info=buddies->groups[group];
528  buddies->currentgroup=group;
529 
530  if(buddy_info->bnum==-1) sprintf(buddy_fn,"%s", fname);
531  else sprintf(buddy_fn,"%s_BUDDY_%02d", fname,buddy_info->bnum);
532  nfname=(sion_apidesc->get_multi_filename_cb?sion_apidesc->get_multi_filename_cb:_sion_get_multi_filename)(buddy_fn,buddy_info->filenum);
533 
534  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "open file for group #%d %s [step=%d grank=%2d of %2d, lrank=%2d of %2d filelrank=%2d]\n",
535  buddy_info->groupid,nfname,buddy_info->stepnum,
536  sion_gendata->grank,sion_gendata->gsize, buddy_info->rank,buddy_info->size,buddy_info->filelrank));
537 
538  /* test if tsk is a reader, a task is only in one step a reader */
539  if( (buddy_info->myrole == SION_ROLE_READER)
540  || (buddy_info->myrole == SION_ROLE_COLLECTOR_READER)) {
541  buddy_info->sid=sid; /* use already defined sid, this will be the master data structure */
542  rc=_sion_paropen_generic_one_file(buddy_info->sid, nfname, flags_store, prefix,
543  &sion_gendata->numfiles, &buddy_info->filenum,
544  chunksize, fsblksize,
545  buddy_info->rank, buddy_info->size, &sion_gendata->grank,
546  _SION_INTERNAL_FLAG_BUDDY_READ, NULL, sion_gendata,
547  buddies);
548 
549  /* store internal buddy data structure */
550  /* test sid and get internal data structure */
551  if ((rc<0) || (sid<0) || (_sion_vcdtype(sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc = _sion_vcdtovcon(sid))) {
552  free(buddy_fn);
553  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: invalid sion_filedesc %d", sid));
554  }
555 
556  /* store additional data */
557  sion_filedesc->buddies=buddies;
558 
559  } else {
560  sion_int64 dummy_chunksize;
561  sion_int32 dummy_fsblksize;
562  buddy_info->sid = _sion_newvcd(NULL,SION_FILEDESCRIPTOR); /* create a new sid */
563  rc=_sion_paropen_generic_one_file(buddy_info->sid, nfname, flags_store, prefix,
564  &sion_gendata->numfiles, &buddy_info->filenum,
565  &dummy_chunksize, &dummy_fsblksize,
566  buddy_info->rank, buddy_info->size, &sion_gendata->grank,
567  _SION_INTERNAL_FLAG_BUDDY_READ, NULL, sion_gendata,
568  buddies);
569 
570  }
571 
572  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO afteropen [grank=%2d step=%d] rc=%d\n",sion_gendata->grank,step,rc));
573  free(nfname);
574 
575  } else {
576  /* nothing to do in this step */
577  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO no-op [grank=%2d]\n",sion_gendata->grank));
578  }
579 
580  /* barrier between steps */
581  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO beforegbarrier [grank=%2d]\n",sion_gendata->grank));
582  sion_apidesc->barrier_cb(sion_gendata->comm_data_global);
583  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO aftergbarrier [grank=%2d]\n",sion_gendata->grank));
584 
585 
586  } /* for steps */
587 
588 
589  } else {
590  free(buddies);
591  free(buddy_fn);
592  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: unknown file mode"));
593  }
594  /* 'buddies' is still used later and should not be freed here. */
595  /* free(buddies); */
596  free(buddy_fn);
597  sion_apidesc->barrier_cb(sion_gendata->comm_data_global);
598 
599 
600  return(rc);
601 }
602 #undef DFUNCTION
603 
604 
616 #define DFUNCTION "_sion_parclose_generic_buddy"
617 int _sion_parclose_generic_buddy(int sid,
618  int rank,
619  int ntasks,
620  int mapping_size,
621  sion_int32 *mapping,
622  _sion_generic_gendata *sion_gendata) {
623  int rc=SION_SUCCESS;
624  _sion_filedesc *sion_filedesc;
625  /* _sion_generic_apidesc *sion_apidesc; */
626  _sion_generic_buddy *buddies, *buddyptr;
627  int b_mapping_size=0,group,step;
628  sion_int32 *b_mapping=NULL;
629  _sion_generic_buddy_info *buddy_info;
630 
631  int b, pass;
632 
633  /* obtain pointers to internal data structures */
634  if ( (sid<0) || (_sion_vcdtype(sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc = _sion_vcdtovcon(sid))) {
635  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_parclose_generic_buddy: invalid sion_filedesc %d", sid));
636  }
637  /* sion_apidesc=sion_gendata->apidesc; */
638  buddies=sion_filedesc->buddies;
639 
640 
641  if (sion_filedesc->mode == SION_FILEMODE_WRITE) {
642 
643  /* close buddy files */
644  for(b=0;b<sion_filedesc->buddylevel;b++) {
645  buddyptr=&buddies[b];
646 
647 
648  /* collect mapping */
649  _sion_generic_collect_mapping_buddy(buddyptr, sion_gendata, &b_mapping_size, &b_mapping);
650 
651 
652  /* close files */
653  for(pass=1;pass<=_SION_BW_SCHED_NUM_PASSES;pass++) {
654 
655  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYC pass=%d [grank=%2d] op=%d\n",pass,sion_gendata->grank,
656  _sion_buddy_bwsched(buddyptr->buddy_send.groupnum, sion_gendata->numfiles, pass)));
657 
658  switch (_sion_buddy_bwsched(buddyptr->buddy_send.groupnum, sion_gendata->numfiles, pass)) {
659  case _SION_BW_SCHED_ACTIONA:
660  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYc call parallel close COLL [gendata: grank=%2d, group=%d of %d, lrank=%d of %d]\n",
661  sion_gendata->grank, buddyptr->buddy_coll.groupnum,sion_gendata->numfiles,
662  buddyptr->buddy_coll.rank, buddyptr->buddy_coll.size));
663  _sion_parclose_generic(buddyptr->buddy_coll.sid, buddyptr->buddy_coll.rank, buddyptr->buddy_coll.size,
664  b_mapping_size, b_mapping, _SION_INTERNAL_FLAG_BUDDY_COLL, sion_gendata, buddyptr );
665  break;
666  case _SION_BW_SCHED_ACTIONB:
667  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYc call parallel close SEND [gendata: grank=%2d, group=%d of %d, lrank=%d of %d]\n",
668  sion_gendata->grank, buddyptr->buddy_send.groupnum,sion_gendata->numfiles,
669  buddyptr->buddy_send.rank, buddyptr->buddy_send.size));
670  _sion_parclose_generic(buddyptr->buddy_send.sid, buddyptr->buddy_send.rank, buddyptr->buddy_send.size,
671  0, NULL, _SION_INTERNAL_FLAG_BUDDY_SEND, sion_gendata, buddyptr );
672  break;
673  default:
674  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYC no-op [grank=%2d]\n",sion_gendata->grank));
675  break;
676  } /* switch */
677  } /* for pass */
678  } /* for buddies */
679 
680 
681  _SION_SAFE_FREE(b_mapping, NULL);
682  _SION_SAFE_FREE(buddies, NULL);
683 
684 
685  /* STEP: close normal files */
686  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "call parallel close of %d files, sid=%d\n",
687  sion_gendata->numfiles, sid));
688  rc = _sion_parclose_generic( sid, sion_filedesc->rank, sion_filedesc->ntasks, mapping_size, mapping, _SION_INTERNAL_FLAG_NORMAL,
689  sion_gendata, NULL );
690  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "leave parallel close of %d files in #tasks=%d globalrank=%d\n", sion_gendata->numfiles,
691  sion_gendata->lsize, sion_gendata->grank));
692 
693  } else if (sion_filedesc->mode == SION_FILEMODE_READ) {
694 
695  /* loop over all groups */
696  for(step=0;step<buddies->numsteps;step++) {
697  /* search for group with this step */
698  group=-1;
699  for(b=0; ( (b<buddies->numgroups) && (group==-1) ); b++ ) {
700 
701  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "check group #%d of %d %d==%d %x\n",b, buddies->numgroups, buddies->groups[b]->stepnum,step, buddies->groups[b]));
702  if (buddies->groups[b]->stepnum==step) group=b;
703  }
704  buddy_info=buddies->groups[group];
705 
706  if(group!=-1) {
707  /* call parclose for this group */
708  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "call parallel close of %d files, sid=%d\n",
709  sion_gendata->numfiles, sid));
710  buddies->currentgroup=group;
711  rc = _sion_parclose_generic( buddy_info->sid, buddy_info->rank,buddy_info->size, -1, NULL, _SION_INTERNAL_FLAG_BUDDY_READ,
712  sion_gendata, buddies );
713  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "leave parallel close of %d files in #tasks=%d globalrank=%d\n", sion_gendata->numfiles,
714  sion_gendata->lsize, sion_gendata->grank));
715  }
716  } /* step */
717 
718 
719  } else {
720  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_parclose_generic_buddy: unknown file mode"));
721  }
722 
723 
724  return(rc);
725 }
726 #undef DFUNCTION
727 
728 
737 #define DFUNCTION "_sion_coll_fwrite_buddy"
738 int _sion_coll_fwrite_buddy(const void *data,
739  size_t size,
740  size_t nitems,
741  int sid,
742  _sion_generic_gendata *sion_gendata ) {
743  int rc=SION_SUCCESS;
744  _sion_filedesc *sion_filedesc,*sion_filedesc_coll,*sion_filedesc_send;
745  _sion_generic_apidesc *sion_apidesc;
746  _sion_generic_buddy *buddies, *buddyptr;
747  sion_int64 spec[2], ownnewposition;
748  int b, pass, collector=0;
749 
750  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "enter parallel write buddy\n"));
751 
752  /* obtain pointers to internal data structures */
753  if ( (sid<0) || (_sion_vcdtype(sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc = _sion_vcdtovcon(sid))) {
754  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_coll_fwrite_buddy: invalid sion_filedesc %d", sid));
755  }
756  sion_apidesc=sion_gendata->apidesc;
757  buddies=sion_filedesc->buddies;
758 
759  /* buddy files */
760  for(b=0;b<sion_filedesc->buddylevel;b++) {
761  buddyptr=&buddies[b];
762 
763  /* get pointer to data structures */
764  if ( (buddyptr->buddy_coll.sid<0) || (_sion_vcdtype(buddyptr->buddy_coll.sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc_coll = _sion_vcdtovcon(buddyptr->buddy_coll.sid))) {
765  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_coll_fwrite_buddy: invalid sion_filedesc %d", buddyptr->buddy_coll.sid));
766  }
767  if ( (buddyptr->buddy_send.sid<0) || (_sion_vcdtype(buddyptr->buddy_send.sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc_send = _sion_vcdtovcon(buddyptr->buddy_send.sid))) {
768  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_coll_fwrite_buddy: invalid sion_filedesc %d", buddyptr->buddy_send.sid));
769  }
770 
771 
772  /* open files */
773  for(pass=1;pass<=_SION_BW_SCHED_NUM_PASSES;pass++) {
774 
775  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYw pass=%d [grank=%2d] op=%d\n",pass,sion_gendata->grank,
776  _sion_buddy_bwsched(buddyptr->buddy_send.groupnum, sion_gendata->numfiles, pass)));
777 
778  switch (_sion_buddy_bwsched(buddyptr->buddy_send.groupnum, sion_gendata->numfiles, pass)) {
779  case _SION_BW_SCHED_ACTIONA:
780  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYw call parallel write COLL [gendata: grank=%2d, group=%d of %d, lrank=%d of %d] %d..%d\n",
781  sion_gendata->grank, buddyptr->buddy_coll.groupnum,sion_gendata->numfiles,
782  buddyptr->buddy_coll.rank, buddyptr->buddy_coll.size,buddyptr->buddy_coll.from_index,buddyptr->buddy_coll.to_index));
783  spec[0]=0;spec[1]=0;
784  if(sion_filedesc_coll->rank == collector) {
785  ownnewposition=sion_filedesc_coll->currentpos;
786  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYw call parallel write COLL currentpos=%d\n",(int) sion_filedesc_coll->currentpos));
787  }
788  rc = sion_apidesc->gather_execute_cb(data,spec,2, sion_filedesc_coll->fsblksize,
789  buddyptr->buddy_coll.commgroup,collector,buddyptr->buddy_coll.from_index,buddyptr->buddy_coll.to_index,
790  buddyptr->buddy_coll.sid, _sion_generic_collective_process_write);
791  if(sion_filedesc_coll->rank == collector) {
792  _sion_file_flush(sion_filedesc_coll->fileptr);
793  _sion_file_set_position(sion_filedesc_coll->fileptr,ownnewposition);sion_filedesc_coll->currentpos=ownnewposition;
794  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYw call parallel write COLL currentpos=%d\n",(int) sion_filedesc_coll->currentpos));
795  }
796  break;
797  case _SION_BW_SCHED_ACTIONB:
798  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYw call parallel write SEND [gendata: grank=%2d, group=%d of %d, lrank=%d of %d] %d..%d\n",
799  sion_gendata->grank, buddyptr->buddy_send.groupnum,sion_gendata->numfiles,
800  buddyptr->buddy_send.rank, buddyptr->buddy_send.size,buddyptr->buddy_send.from_index,buddyptr->buddy_send.to_index));
801 
802  /* ensure free space for this block */
803  if(sion_ensure_free_space(buddyptr->buddy_send.sid,size*nitems) != SION_SUCCESS) {
804  _sion_errorprint(SION_SIZE_NOT_VALID,_SION_ERROR_RETURN,"could not ensure free space for this block, returning %d ...\n", sid);
805  spec[0]=spec[1]=-1; /* signaling error */
806  } else {
807  spec[0]=sion_filedesc_send->currentpos;
808  spec[1]=size*nitems;
809  }
810  rc = sion_apidesc->gather_execute_cb(data,spec,2, sion_filedesc_send->fsblksize,
811  buddyptr->buddy_send.commgroup,collector,buddyptr->buddy_send.from_index,buddyptr->buddy_send.to_index,
812  buddyptr->buddy_send.sid, _sion_generic_collective_process_write);
813  sion_filedesc_send->currentpos+=size*nitems;
814  break;
815  default:
816  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYw no-op [grank=%2d]\n",sion_gendata->grank));
817  break;
818  } /* switch */
819  } /* for pass */
820  } /* for buddies */
821 
822 
823  /* sion_apidesc->barrier_cb(sion_gendata->comm_data_global); */
824 
825  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "leave parallel write buddy\n"));
826 
827 
828 
829  return(rc);
830 }
831 #undef DFUNCTION
832 
833 
842 #define DFUNCTION "_sion_coll_fread_buddy"
843 int _sion_coll_fread_buddy( void *data, size_t size, size_t nitems, int sid) {
844  _sion_filedesc *sion_filedesc,*b_sion_filedesc;
845  _sion_generic_gendata *sion_gendata;
846  _sion_generic_apidesc *sion_apidesc;
847  sion_int64 bread=-1, spec[2], ownnewposition, items_read = 0;
848  int rc_own=SION_STD_SUCCESS,rc_cb=SION_STD_SUCCESS;
849  int collector, firstsender, lastsender, step, b, group;
850  _sion_generic_buddy *buddies;
851  _sion_generic_buddy_info *buddy_info;
852 
853  /* obtain pointers to internal data structures */
854  if ( (sid<0) || (_sion_vcdtype(sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc = _sion_vcdtovcon(sid))) {
855  return(_sion_errorprint(SION_SIZE_NOT_VALID,_SION_ERROR_RETURN,"_sion_coll_fread_buddy: invalid sion_filedesc %d", sid));
856  }
857  DPRINTFP((4, DFUNCTION, _SION_DEFAULT_RANK, "enter usecoll=%d collector=%d collsize=%d (%d tasks, %d files)\n",
858  sion_filedesc->usecoll, sion_filedesc->collector, sion_filedesc->collsize, sion_filedesc->ntasks,sion_filedesc->nfiles));
859 
860  sion_gendata=sion_filedesc->dataptr;
861  sion_apidesc=sion_gendata->apidesc;
862  buddies=sion_filedesc->buddies;
863 
864  /* needed for avoiding subsequent non-collective calls */
865  sion_filedesc->collcmdused=1;
866 
867  /* check collsize */
868  if (sion_filedesc->collsize<=0) {
869  return(_sion_errorprint(SION_SIZE_NOT_VALID,_SION_ERROR_RETURN,"_sion_coll_fread_buddy: collsize=%d <= 0, returning ...\n",
870  (int) sion_filedesc->collsize));
871  }
872 
873 
874  /* loop over all groups */
875  for(step=0;step<buddies->numsteps;step++) {
876  /* search for group with this step */
877  group=-1;
878  for(b=0; ( (b<buddies->numgroups) && (group==-1) ); b++ ) {
879 
880  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "check group #%d of %d %d==%d %x\n",b, buddies->numgroups, buddies->groups[b]->stepnum,step, buddies->groups[b]));
881  if (buddies->groups[b]->stepnum==step) group=b;
882  }
883 
884  if(group!=-1) {
885  /* activity needed for this group */
886 
887  buddy_info=buddies->groups[group];
888 
889  if ( (buddy_info->sid<0) || (_sion_vcdtype(buddy_info->sid) != SION_FILEDESCRIPTOR) || !(b_sion_filedesc = _sion_vcdtovcon(buddy_info->sid))) {
890  return(_sion_errorprint(SION_SIZE_NOT_VALID,_SION_ERROR_RETURN,"_sion_coll_fread_buddy: invalid sion_filedesc %d", buddy_info->sid));
891  }
892 
893  /* parameter of callback function */
894  collector=0;
895  firstsender=buddy_info->from_index;
896  lastsender=buddy_info->to_index;
897 
898 
899  /* check input parameter and position in file */
900  if( (buddy_info->myrole == SION_ROLE_READER)
901  || (buddy_info->myrole == SION_ROLE_COLLECTOR_READER)) {
902 
903  /* ensure to be at the beginning of the right block */
904  if(size*nitems>0) {
905  if(sion_feof(buddy_info->sid)) {
906  _sion_errorprint(SION_SIZE_NOT_VALID,_SION_ERROR_RETURN,"early eof found for this block, returning %d ...\n", buddy_info->sid);
907  spec[0]=spec[1]=-1; /* signaling that no data is requested */
908  } else {
909  /* specification of location in file */
910  spec[0]=sion_filedesc->currentpos;
911  spec[1]=size*nitems;
912  }
913  } else {
914  /* signaling that no data is requested */
915  spec[0]=spec[1]=-1;
916  }
917 
918 
919  }
920 
921 
922  /* read own part */
923  if( (buddy_info->myrole == SION_ROLE_COLLECTOR_READER) ) {
924  rc_own=_sion_generic_collective_process_read(data,spec,buddy_info->sid);
925  firstsender++; /* must not read again */
926  }
927  /* save own position before reading at other positions */
928  if( (buddy_info->myrole == SION_ROLE_COLLECTOR)
929  || (buddy_info->myrole == SION_ROLE_COLLECTOR_READER)) {
930  ownnewposition=sion_filedesc->currentpos;
931  }
932 
933 
934  /* read parts and scatter these to sender tasks via callback function */
935  if(!sion_apidesc->execute_scatter_cb ) {
936  return(_sion_errorprint(SION_SIZE_NOT_VALID,_SION_ERROR_RETURN,
937  "_sion_coll_fread_buddy: API %s not correctly initalized, collective I/O calls missing, aborting",sion_apidesc->name));
938  }
939  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "call execute_gather #%d (step=%d, rank=%d, size=%d, collsize=%d, from=%2d, to=%2d) (bnum=%2d file# %2d) with role %s \n",
940  buddy_info->groupid, buddy_info->stepnum, buddy_info->rank, buddy_info->size, buddy_info->collsize,
941  buddy_info->from_index, buddy_info->to_index, buddy_info->bnum, buddy_info->filenum, _sion_buddy_role_to_str(buddy_info->myrole)));
942 
943  rc_cb=sion_apidesc->execute_scatter_cb(data,spec,2, b_sion_filedesc->fsblksize,
944  buddy_info->commgroup,collector,firstsender,lastsender,buddy_info->sid,
945  _sion_generic_collective_process_read);
946 
947 
948 
949  /* set own position to end of own block read in this call */
950  if( (buddy_info->myrole == SION_ROLE_COLLECTOR)
951  || (buddy_info->myrole == SION_ROLE_COLLECTOR_READER)) {
952  _sion_file_flush(b_sion_filedesc->fileptr);
953  _sion_file_set_position(b_sion_filedesc->fileptr,ownnewposition);b_sion_filedesc->currentpos=ownnewposition;
954  }
955 
956  /* set file pointer in data structure and in file if it is exported and can be used without control of SIONlib */
957  if(buddy_info->myrole == SION_ROLE_READER) {
958  b_sion_filedesc->currentpos+=size*nitems;
959  if(b_sion_filedesc->fileptr_exported) {
960  _sion_file_set_position(b_sion_filedesc->fileptr,b_sion_filedesc->currentpos);
961  }
962  }
963 
964  if( (buddy_info->myrole == SION_ROLE_READER)
965  || (buddy_info->myrole == SION_ROLE_COLLECTOR_READER)) {
966  if( (rc_own == SION_STD_SUCCESS) && (rc_cb == SION_STD_SUCCESS) ) {
967  bread=size*nitems;
968  } else {
969  bread=0;
970  }
971  items_read = size ? bread / size : 0;
972  }
973 
974  } /* froup != -1 */
975 
976  /* barrier between steps */
977  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO beforegbarrier [grank=%2d]\n",sion_gendata->grank));
978  sion_apidesc->barrier_cb(sion_gendata->comm_data_global);
979  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO aftergbarrier [grank=%2d]\n",sion_gendata->grank));
980 
981  } /* for step */
982 
983  DPRINTFP((4, DFUNCTION, _SION_DEFAULT_RANK, "leave usecoll=%d collector=%d collsize=%d (%d tasks, %d files) rc=%d\n",
984  sion_filedesc->usecoll, sion_filedesc->collector, sion_filedesc->collsize, sion_filedesc->ntasks,sion_filedesc->nfiles,items_read));
985 
986  return items_read;
987 
988 }
989 #undef DFUNCTION
990 
991 #define DFUNCTION "_sion_buddy_map"
992 int _sion_buddy_map(
993  _sion_generic_gendata *sion_gendata,
994  int capability,
995  int buddy_idx,
996  _sion_generic_buddy_info *buddy_send,
997  _sion_generic_buddy_info *buddy_coll ) {
998  int rc=SION_SUCCESS;
999  int tmpsize,t,g, g_map, p, p_map, n, n_map, orig, distance,distance_1step,pass;
1000  int *size_per_group = NULL, *group_map_orig_to_new, *group_map_new_to_orig, mynewgroupnr;
1001  sion_int32 helpint2[2];
1002  sion_int32 *tasktogroup = NULL;
1003  sion_int32 *tmpintfield1 = NULL;
1004  int comm_send_rank, comm_send_size, comm_send_grpnum;
1005  int comm_coll_rank, comm_coll_size, comm_coll_grpnum;
1006  void *dummycommgroup=NULL;
1007 
1008  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "buddy_idx=%d capability=%d [gendata: grank=%d of %d, group=%d of %d, lrank=%d of %d]\n",
1009  buddy_idx, capability,
1010  sion_gendata->grank, sion_gendata->gsize,
1011  sion_gendata->filenumber, sion_gendata->numfiles,
1012  sion_gendata->lrank, sion_gendata->lsize));
1013 
1014  distance=buddy_idx; /* higher level buddy CP: groups will be remapped to d=1 buddy CP */
1015  distance_1step=1;
1016 
1017  /* allocate some fields */
1018  if(sion_gendata->grank==0) {
1019 
1020  tmpsize=1*sion_gendata->gsize;
1021  tasktogroup = (sion_int32 *) malloc(tmpsize * sizeof(sion_int32));
1022  if (tasktogroup == NULL) {
1023  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_buddy_map: cannot allocate temporary memory of size %lu (tasktogroup), aborting ...\n",
1024  (unsigned long) tmpsize * sizeof(sion_int32)));
1025  }
1026 
1027  tmpsize=2*sion_gendata->gsize;
1028  tmpintfield1 = (sion_int32 *) malloc(tmpsize * sizeof(sion_int32));
1029  if (tmpintfield1 == NULL) {
1030  free(tasktogroup);
1031  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_buddy_map: cannot allocate temporary memory of size %lu (tmpintfield1), aborting ...\n",
1032  (unsigned long) tmpsize * sizeof(sion_int32)));
1033  }
1034 
1035  size_per_group = (int *) malloc(sion_gendata->numfiles * sizeof(int));
1036  if (size_per_group == NULL) {
1037  free(tasktogroup);
1038  free(tmpintfield1);
1039  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_buddy_map: cannot allocate temporary memory of size %lu (size_per_group), aborting ...\n",
1040  (unsigned long) sion_gendata->numfiles * sizeof(int)));
1041  }
1042 
1043  }
1044 
1045  /* on all tasks */
1046  group_map_orig_to_new = (int *) malloc(sion_gendata->numfiles * sizeof(int));
1047  if (group_map_orig_to_new == NULL) {
1048  free(tasktogroup);
1049  _SION_SAFE_FREE(size_per_group, NULL);
1050  free(tmpintfield1);
1051  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_buddy_map: cannot allocate temporary memory of size %lu (group_map_orig_to_new), aborting ...\n",
1052  (unsigned long) sion_gendata->numfiles * sizeof(int)));
1053  }
1054 
1055  group_map_new_to_orig = (int *) malloc(sion_gendata->numfiles * sizeof(int));
1056  if (group_map_new_to_orig == NULL) {
1057  _SION_SAFE_FREE(size_per_group, NULL);
1058  free(group_map_orig_to_new);
1059  free(tasktogroup);
1060  free(tmpintfield1);
1061  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_buddy_map: cannot allocate temporary memory of size %lu (group_map_new_to_orig), aborting ...\n",
1062  (unsigned long) sion_gendata->numfiles * sizeof(int)));
1063  }
1064 
1065  /* Step1: gather group number */
1066  helpint2[0]=sion_gendata->filenumber;
1067  sion_gendata->apidesc->gatherr_cb(helpint2, tasktogroup, sion_gendata->comm_data_global, _SION_INT32,1,0);
1068 
1069 
1070  /* Step2: gather local size */
1071  helpint2[0]=sion_gendata->lsize;
1072  helpint2[1]=capability;
1073  sion_gendata->apidesc->gatherr_cb(helpint2, tmpintfield1, sion_gendata->comm_data_global, _SION_INT32,2,0);
1074  if(sion_gendata->grank==0) {
1075  for(t=0;t<sion_gendata->gsize;t++) {
1076  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "task-map --> t=%2d grpnr=%2d lsize=%2d capability=%d\n",
1077  t,tasktogroup[t],tmpintfield1[2*t+0],tmpintfield1[2*t+1]));
1078  }
1079  /* --> tasktogroup[t] = groupnr, tmpintfield1[t][0] = lsize tmpintfield1[t][1] = capability */
1080  }
1081 
1082  /* Step2: build vector with size info per group and group map */
1083  if(sion_gendata->grank==0) {
1084  for(t=0;t<sion_gendata->gsize;t++) {
1085  size_per_group[tasktogroup[t]] = tmpintfield1[2*t+0];
1086  }
1087  }
1088 
1089  for(g=0;g<sion_gendata->numfiles;g++) {
1090  orig=(g*distance) % sion_gendata->numfiles;
1091  group_map_orig_to_new[orig]=g;
1092  group_map_new_to_orig[g]=orig;
1093  }
1094 
1095  for(g=0;g<sion_gendata->numfiles;g++) {
1096  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "grp-map --> g=%2d->%2d\n",g,group_map_orig_to_new[g]));
1097  }
1098 
1099 
1100  /* Step3: compute send group */
1101  if(sion_gendata->grank==0) {
1102  for(t=0;t<sion_gendata->gsize;t++) {
1103  g=tasktogroup[t];
1104  g_map=group_map_orig_to_new[g];
1105  p_map=(g_map-distance_1step + sion_gendata->numfiles) % sion_gendata->numfiles;
1106  p=group_map_new_to_orig[p_map];
1107  tmpintfield1[2*t+0] = g_map;
1108  tmpintfield1[2*t+1] = size_per_group[p];
1109  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "comm-send --> t=%2d grpnr=%2d grpmap=%2d prevgr=%2d prevgrmap=%2d prev_lsize=%2d\n",
1110  t, g, tmpintfield1[2*t+0], p, p_map, tmpintfield1[2*t+1]));
1111  }
1112  /* --> tmpintfield1[t][0] = own_groupnr, tmpintfield1[t][1] = lsize of prev_group */
1113  }
1114 
1115  /* Step4: scatter info about send group */
1116  sion_gendata->apidesc->scatterr_cb(tmpintfield1, helpint2, sion_gendata->comm_data_global, _SION_INT32,2,0);
1117 
1118  /* Step5: compute ranks for send group */
1119  mynewgroupnr=comm_send_grpnum=helpint2[0];
1120  buddy_send->rank=comm_send_rank=helpint2[1]+sion_gendata->lrank;
1121  buddy_send->size=comm_send_size=helpint2[1]+sion_gendata->lsize;
1122  buddy_send->collsize=sion_gendata->lsize;
1123  buddy_send->groupnum=mynewgroupnr;
1124  buddy_send->filenum=group_map_new_to_orig[mynewgroupnr];
1125  buddy_send->from_index=helpint2[1];
1126  buddy_send->to_index=helpint2[1]+sion_gendata->lsize-1;
1127  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_SEND d=%d grpnum=%2d lrank=%2d lsize=%2d mynewgroupnr=%2d collsize=%2d %d..%d fnum=%d\n",
1128  distance,comm_send_grpnum,comm_send_rank,comm_send_size,mynewgroupnr,
1129  buddy_send->collsize,buddy_send->from_index,buddy_send->to_index,
1130  buddy_send->filenum));
1131 
1132  /* Step6: compute coll group */
1133  if(sion_gendata->grank==0) {
1134  for(t=0;t<sion_gendata->gsize;t++) {
1135  g=tasktogroup[t];
1136  g_map=group_map_orig_to_new[g];
1137  n_map=(g_map+distance_1step) % sion_gendata->numfiles;
1138  n=group_map_new_to_orig[n_map];
1139  tmpintfield1[2*t+0] = n_map;
1140  tmpintfield1[2*t+1] = size_per_group[n];
1141  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "comm-coll --> t=%2d grpnr=%2d grpmap=%2d nextgr=%2d nextgrmap=%2d next_lsize=%2d\n",
1142  t, g, g_map, n, tmpintfield1[2*t+0], tmpintfield1[2*t+1]));
1143  }
1144  /* --> tmpintfield1[t][0] = next_groupnr_map, tmpintfield1[t][0] = lsize of next_group */
1145  }
1146 
1147  /* Step7: scatter info about coll group */
1148  sion_gendata->apidesc->scatterr_cb(tmpintfield1, helpint2, sion_gendata->comm_data_global, _SION_INT32,2,0);
1149 
1150  /* Step8: compute ranks for coll group */
1151  comm_coll_grpnum=helpint2[0];
1152  buddy_coll->rank=comm_coll_rank=sion_gendata->lrank;
1153  buddy_coll->size=comm_coll_size=sion_gendata->lsize+helpint2[1];
1154  buddy_coll->collsize=helpint2[1];
1155  buddy_coll->groupnum=comm_coll_grpnum;
1156  buddy_coll->filenum=group_map_new_to_orig[comm_coll_grpnum];
1157  buddy_coll->from_index=sion_gendata->lsize;
1158  buddy_coll->to_index=sion_gendata->lsize+helpint2[1]-1;
1159  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_COLL d=%d grpnum=%2d lrank=%2d lsize=%2d collsize=%2d %d..%d fnum=%d\n",
1160  distance,comm_coll_grpnum,comm_coll_rank,comm_coll_size,
1161  buddy_coll->collsize,buddy_coll->from_index,buddy_coll->to_index,
1162  buddy_coll->filenum));
1163 
1164  /* Step9: create local communicators for send/coll */
1165 
1166  for(pass=1;pass<=_SION_BW_SCHED_NUM_PASSES;pass++) {
1167  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "pass=%d [grank=%2d] op=%d\n",pass,sion_gendata->grank,
1168  _sion_buddy_bwsched(mynewgroupnr, sion_gendata->numfiles, pass)));
1169 
1170  switch (_sion_buddy_bwsched(mynewgroupnr, sion_gendata->numfiles, pass)) {
1171  case _SION_BW_SCHED_ACTIONA:
1172  rc=sion_gendata->apidesc->create_lcg_cb(&buddy_coll->commgroup,sion_gendata->comm_data_global,
1173  sion_gendata->grank,sion_gendata->gsize,
1174  comm_coll_rank,comm_coll_size,
1175  comm_coll_grpnum,sion_gendata->numfiles);
1176  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_created comm_coll (d=%1d, p=%1d) [gendata: mygrp=%2d grank=%2d of %2d, group=%2d of %2d, lrank=%2d of %2d]\n",
1177  distance,pass,mynewgroupnr,sion_gendata->grank,sion_gendata->gsize,
1178  comm_coll_grpnum,sion_gendata->numfiles,
1179  comm_coll_rank,comm_coll_size ));
1180  break;
1181  case _SION_BW_SCHED_ACTIONB:
1182  rc=sion_gendata->apidesc->create_lcg_cb(&buddy_send->commgroup,sion_gendata->comm_data_global,
1183  sion_gendata->grank,sion_gendata->gsize,
1184  comm_send_rank,comm_send_size,
1185  comm_send_grpnum,sion_gendata->numfiles);
1186  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_created comm_send (d=%1d, p=%1d) [gendata: mygrp=%2d grank=%2d of %2d, group=%2d of %2d, lrank=%2d of %2d]\n",
1187  distance,pass,mynewgroupnr,sion_gendata->grank,sion_gendata->gsize,
1188  comm_send_grpnum,sion_gendata->numfiles,
1189  comm_send_rank,comm_send_size ));
1190  break;
1191  case _SION_BW_SCHED_NOACTION:
1192  rc=sion_gendata->apidesc->create_lcg_cb(&dummycommgroup,sion_gendata->comm_data_global,
1193  sion_gendata->grank,sion_gendata->gsize,
1194  0,1,
1195  -1,sion_gendata->numfiles);
1196  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_created dummy (d=%1d, p=%1d) [gendata: mygrp=%2d grank=%2d of %2d, group=%2d of %2d, lrank=%2d of %2d]\n",
1197  distance,pass,mynewgroupnr,sion_gendata->grank,sion_gendata->gsize,
1198  -1,sion_gendata->numfiles,0,1 ));
1199  break;
1200 
1201  default: break;
1202  }
1203  }
1204 
1205  /* free fields */
1206  if(sion_gendata->grank==0) {
1207  free(tasktogroup);
1208  free(tmpintfield1);
1209  free(size_per_group);
1210  }
1211  free(group_map_new_to_orig);
1212  free(group_map_orig_to_new);
1213 
1214  return(rc);
1215 }
1216 #undef DFUNCTION
1217 
1218  /* pass=1..3 */
1219 #define DFUNCTION "_sion_buddy_bwsched"
1220 int _sion_buddy_bwsched(int groupnr, int numgroups, int pass) {
1221  int res=_SION_BW_SCHED_NOACTION;
1222  if(numgroups%2==0) { /* #groups even */
1223  if(groupnr%2==0) { /* groupnr even */
1224  if(pass==1) res=_SION_BW_SCHED_ACTIONA;
1225  if(pass==2) res=_SION_BW_SCHED_ACTIONB;
1226  } else { /* groupnr even */
1227  if(pass==1) res=_SION_BW_SCHED_ACTIONB;
1228  if(pass==2) res=_SION_BW_SCHED_ACTIONA;
1229  }
1230  } else {
1231  if(groupnr%2==0) { /* groupnr even */
1232  if((pass==1) && (groupnr != (numgroups-1))) res=_SION_BW_SCHED_ACTIONA;
1233  if((pass==2) && (groupnr != 0)) res=_SION_BW_SCHED_ACTIONB;
1234  if((pass==3) && (groupnr == 0)) res=_SION_BW_SCHED_ACTIONB;
1235  if((pass==3) && (groupnr == (numgroups-1))) res=_SION_BW_SCHED_ACTIONA;
1236  } else { /* groupnr even */
1237  if(pass==1) res=_SION_BW_SCHED_ACTIONB;
1238  if(pass==2) res=_SION_BW_SCHED_ACTIONA;
1239  }
1240  }
1241  return(res);
1242 }
1243 #undef DFUNCTION
1244 
1249 #define DFUNCTION "_sion_generic_collect_mapping"
1250 int _sion_generic_collect_mapping_buddy( _sion_generic_buddy *buddyptr,
1251  _sion_generic_gendata *sion_gendata,
1252  int *mapping_size,
1253  sion_int32 **mapping) {
1254  int rc=SION_SUCCESS;
1255  int t;
1256  _sion_generic_apidesc *sion_apidesc;
1257  sion_int32 lpos[2], *receivemap=NULL, iamreceiver, receiver = -1;
1258 
1259  sion_apidesc=sion_gendata->apidesc;
1260 
1261  *mapping = NULL; *mapping_size = 0;
1262 
1263 
1264  /* mapping data will be collected by master of first physical file */
1265  if((buddyptr->buddy_coll.groupnum==0) && (buddyptr->buddy_coll.rank==0)) {
1266  /* allocate data */
1267  *mapping_size=sion_gendata->gsize;
1268  *mapping = (sion_int32 *) malloc(*mapping_size * 2 * sizeof(sion_int32));
1269  if (*mapping == NULL) {
1270  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_generic_collect_mapping_buddy: Cannot allocate memory for mapping"));
1271  }
1272  }
1273 
1274  /* gather info about send about global rank of master of first file on grank 0 */
1275  if(sion_gendata->grank==0) {
1276  receivemap = (sion_int32 *) malloc(sion_gendata->gsize * sizeof(sion_int32));
1277  if (receivemap == NULL) {
1278  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_generic_collect_mapping_buddy: Cannot allocate memory for receivemap"));
1279  }
1280  }
1281 
1282  if((buddyptr->buddy_coll.filenum==0) && (buddyptr->buddy_coll.rank==0)) iamreceiver=sion_gendata->grank;
1283  else iamreceiver=-1;
1284  sion_apidesc->gatherr_cb(&iamreceiver, receivemap, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
1285  if(sion_gendata->grank==0) {
1286  for(t=0;t<sion_gendata->gsize;t++) {
1287  if(receivemap[t]>=0) {
1288  receiver=receivemap[t];
1289  break;
1290  }
1291  }
1292  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "receiver of mapping grank=%d\n", receiver));
1293  }
1294  sion_apidesc->bcastr_cb(&receiver, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
1295 
1296  /* receive global rank of master of first file on grank 0 */
1297  lpos[0] = buddyptr->buddy_send.filenum;
1298  lpos[1] = buddyptr->buddy_send.rank;
1299  sion_apidesc->gatherr_cb(&lpos, *mapping, sion_gendata->comm_data_global, _SION_INT32, 2, receiver);
1300 
1301  if(receivemap!=NULL) free(receivemap);
1302 
1303  return(rc);
1304 }
1305 #undef DFUNCTION
1306 
1307 
1308 #define DFUNCTION "_sion_generic_buddy_get_and_distribute_info_from_file"
1309 int _sion_generic_buddy_get_and_distribute_info_from_file( _sion_generic_gendata *sion_gendata, char *fname, int root,
1310  sion_int32 *filenumber, sion_int32 *numfiles,
1311  sion_int32 *lrank, sion_int32 *lsize) {
1312 
1313  int sid = -1, ntasks, nfiles, t;
1314  int rc = SION_SUCCESS;
1315  FILE *fileptr;
1316  sion_int32 fsblksize;
1317  int *tasksinfile = NULL;
1318  int mapping_size = -1;
1319  sion_int32 *mapping = NULL;
1320  sion_int32 lpos[2];
1321  _sion_generic_apidesc *sion_apidesc;
1322 
1323  sion_apidesc=sion_gendata->apidesc;
1324 
1325  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "entering function sion_gendata->grank=%d\n",sion_gendata->grank));
1326 
1327  if(sion_gendata->grank == root) {
1328  /* open and get mapping of sion file */
1329  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "before open\n"));
1330  sid=_sion_open_read(fname,_SION_FMODE_READ|_SION_FMODE_ANSI,_SION_READ_MASTER_ONLY_OF_MULTI_FILES,
1331  &ntasks,&nfiles,NULL,&fsblksize,NULL,&fileptr);
1332  if(sid>=0) {
1333  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "after open\n"));
1334  rc=sion_get_mapping(sid,&mapping_size,&mapping,numfiles);
1335  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "sion file %d files\n", *numfiles));
1336  } else {
1337  *numfiles=-1;
1338  }
1339  }
1340 
1341 
1342  /* each task has to know if more than one file was used in sion file */
1343  sion_apidesc->bcastr_cb(numfiles, sion_gendata->comm_data_global, _SION_INT32, 1, root);
1344  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "%s: numfiles=%d\n",fname,*numfiles));
1345 
1346  if((sion_gendata->grank == root) && (*numfiles>1)) {
1347  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "%s: mapping_size=%d sion_gendata->gsize=%d\n",fname,*numfiles,mapping_size,sion_gendata->gsize));
1348  if(mapping_size!=sion_gendata->gsize) {
1349  return(_sion_errorprint(SION_NOT_SUCCESS,_SION_ERROR_RETURN,
1350  "_sion_generic_buddy_get_and_distribute_info_from_file: Incorrect sum of ntasks of files %d <> %d\n",
1351  mapping_size, sion_gendata->gsize));
1352  }
1353  }
1354 
1355  if(*numfiles<0) {
1356  return(_sion_errorprint(SION_NOT_SUCCESS,_SION_ERROR_RETURN,
1357  "_sion_generic_buddy_get_and_distribute_info_from_file: could not get numfiles from sion file\n"));
1358  }
1359 
1360  if(*numfiles>1) {
1361  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "before scatter\n"));
1362  if(sion_gendata->grank==root) {
1363  for(t=0;t<mapping_size;t++) {
1364  DPRINTFP((1, DFUNCTION, sion_gendata->grank, " %d -> (%d,%d)\n",t,mapping[t*2],mapping[t*2+1]));
1365  }
1366  }
1367 
1368  /* scatter mapping to all tasks */
1369  sion_apidesc->scatterr_cb(mapping, lpos, sion_gendata->comm_data_global, _SION_INT32, 2, root);
1370  *filenumber=lpos[0];
1371  *lrank =lpos[1];
1372  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "after scatter filenum+lrank (%d,%d)\n",*filenumber,*lrank));
1373 
1374  /* compute and scatter number of tasks in each file */
1375  if(sion_gendata->grank==root) {
1376  tasksinfile = (int *) malloc(*numfiles * sizeof(int));
1377  if (tasksinfile == NULL) {
1378  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_generic_get_and_distribute_info_from_file: Cannot allocate memory for tasksinfile counter vector"));
1379  }
1380  for(t=0;t<*numfiles;t++) tasksinfile[t]=0; /* init counter */
1381  for(t=0;t<mapping_size;t++) tasksinfile[ mapping[t*2] ]++; /* count tasks in file */
1382  for(t=0;t<mapping_size;t++) mapping[t*2+1]=tasksinfile[ mapping[t*2] ]; /* set 2nd value of mapping to lsize */
1383  }
1384  sion_apidesc->scatterr_cb(mapping, lpos, sion_gendata->comm_data_global, _SION_INT32, 2, root);
1385  *lsize =lpos[1];
1386  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "after scatter lsize (%d, %d of %d)\n",*filenumber, *lrank, *lsize));
1387 
1388  if(sion_gendata->grank==root) {
1389  if(tasksinfile) free(tasksinfile);
1390  }
1391  /* WARNING: mapping file of sion file is now destroyed and should not be used until close */
1392 
1393  } else {
1394  *filenumber=0;
1395  *lrank = sion_gendata->grank;
1396  *lsize = sion_gendata->gsize;
1397  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "only one file -> filenumber=%d lRank=%d\n",*filenumber,*lrank));
1398  }
1399 
1400  if(sion_gendata->grank == root) {
1401  /* frees also mapping vector */
1402  if (sid>=0) _sion_close_sid(sid);
1403  }
1404 
1405  return(rc);
1406 }
1407 #undef DFUNCTION
1408 
1409 
1410 #define DFUNCTION "_sion_generic_buddy_get_and_distribute_info_from_one_file"
1411 int _sion_generic_buddy_get_and_distribute_info_from_one_file( _sion_generic_gendata *sion_gendata, char *fname, int root,
1412  sion_int32 *filenumber, sion_int32 *numfiles,
1413  sion_int32 *lrank, sion_int32 *lsize) {
1414 
1415  int rc = SION_SUCCESS;
1416  int t, mapping_size = 0, grank, *mapping = NULL;
1417  sion_int32 file_filenumber,file_numfiles,file_lrank,file_lsize;
1418  _sion_filedesc *sion_filedesc = NULL;
1419  _sion_fileptr *sion_fileptr;
1420  _sion_generic_apidesc *sion_apidesc;
1421 
1422  sion_apidesc=sion_gendata->apidesc;
1423 
1424  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "entering function sion_gendata->grank=%d\n",sion_gendata->grank));
1425 
1426  if(sion_gendata->grank == root) {
1427  /* open and get globalranks of sion file */
1428  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "before open\n"));
1429  /* allocate and initialise internal data structure with default values (NULL and -1) */
1430  sion_filedesc = _sion_alloc_filedesc();
1431  if (sion_filedesc == NULL) {
1432  return(_sion_errorprint(SION_ID_UNDEF,SION_ID_UNDEF,
1433  "sion_open: cannot allocate filedescriptor structure of size %lu (sion_filedesc), aborting ...\n",
1434  (unsigned long) sizeof(sion_filedesc)));
1435  }
1436  _sion_init_filedesc(sion_filedesc);
1437 
1438  /* open file */
1440  if (!sion_fileptr) {
1441  return(_sion_errorprint(SION_ID_UNDEF,_SION_ERROR_RETURN,"sion_open: cannot open %s for reading, aborting ...\n", fname));
1442  }
1443  sion_filedesc->fileptr = sion_fileptr;
1444 
1445  /* read part of header which does not depend on ntasks */
1446  rc = _sion_read_header_fix_part(sion_filedesc);
1447  if (rc!=SION_SUCCESS) {
1448  return(_sion_errorprint(SION_ID_UNDEF,_SION_ERROR_RETURN,"sion_open: cannot read header from file %s, aborting ...\n", fname));
1449  }
1450  sion_filedesc->rank = 0;
1451  sion_filedesc->state = SION_FILESTATE_SEROPEN;
1452  sion_filedesc->mode = SION_FILEMODE_READ;
1453 
1454  /* memory allocation for internal fields */
1455  _sion_alloc_filedesc_arrays(sion_filedesc);
1456 
1457  /* read part of header which depends on ntasks */
1458  rc = _sion_read_header_var_part(sion_filedesc);
1459  if (rc!=SION_SUCCESS) {
1460  return(_sion_errorprint(SION_ID_UNDEF,_SION_ERROR_RETURN,"sion_open: cannot read header (var part) from file %s, aborting ...\n", fname));
1461  }
1462 
1463  file_numfiles=sion_filedesc->nfiles;
1464  file_filenumber=sion_filedesc->filenumber;
1465  file_lsize=sion_filedesc->ntasks;
1466 
1467  /* allocate mapping vector */
1468  mapping_size=sion_gendata->gsize;
1469  mapping = (sion_int32 *) malloc(mapping_size * 2 * sizeof(sion_int32));
1470  if (mapping == NULL) {
1471  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_generic_buddy_get_and_distribute_info_from_one_file: cannot allocate temporary memory of size %lu (mapping), aborting ...\n",
1472  (unsigned long) mapping_size * 2 * sizeof(sion_int32)));
1473  }
1474 
1475  }
1476 
1477 
1478  /* each task has to know some number about local file */
1479  sion_apidesc->bcastr_cb(&file_numfiles, sion_gendata->comm_data_global, _SION_INT32, 1, root);
1480  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "%s: numfiles=%d\n",fname,file_numfiles));
1481  sion_apidesc->bcastr_cb(&file_filenumber, sion_gendata->comm_data_global, _SION_INT32, 1, root);
1482  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "%s: filenumber=%d\n",fname,file_filenumber));
1483  sion_apidesc->bcastr_cb(&file_lsize, sion_gendata->comm_data_global, _SION_INT32, 1, root);
1484  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "%s: file_lsize=%d\n",fname,file_lsize));
1485 
1486 
1487  if(file_numfiles!=*numfiles) {
1488  _SION_SAFE_FREE(mapping, NULL);
1489  return(_sion_errorprint(SION_NOT_SUCCESS,_SION_ERROR_RETURN,
1490  "_sion_generic_buddy_get_and_distribute_info_from_one_file: Incorrect number of files %d <> %d\n",
1491  file_numfiles,*numfiles));
1492  }
1493 
1494  /* init mapping vector lrank */
1495  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "before scatter\n"));
1496  if(sion_gendata->grank==root) {
1497  for(t=0;t<mapping_size;t++) mapping[t]=-1;
1498  for(t=0;t<file_lsize;t++) {
1499  grank=sion_filedesc->all_globalranks[t];
1500  if(grank>=0) {
1501  mapping[grank]=t;
1502  DPRINTFP((1, DFUNCTION, sion_gendata->grank, " file=%s mapping[%d] -> (%d)\n",fname,grank,mapping[grank]));
1503  }
1504  }
1505  }
1506 
1507  /* scatter mapping to all tasks */
1508  sion_apidesc->scatterr_cb(mapping, &file_lrank, sion_gendata->comm_data_global, _SION_INT32, 1, root);
1509  if(file_lrank!=-1) {
1510  *filenumber=file_filenumber;
1511  *lrank =file_lrank;
1512  *lsize =file_lsize;
1513  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "after scatter filenum=%d lrank=%d lsize=%d\n",*filenumber,*lrank,*lsize));
1514  }
1515 
1516  if(sion_gendata->grank == root) {
1517  /* close current file */
1518  _sion_free_filedesc_arrays(sion_filedesc);
1519  _sion_file_close(sion_filedesc->fileptr);
1520  sion_filedesc->fileptr=NULL;
1521  free(mapping);
1522  }
1523 
1524  return(rc);
1525 }
1526 #undef DFUNCTION
int sion_get_mapping(int sid, int *mapping_size, sion_int32 **mapping, int *numfiles)
Returns pointers to the internal field mapping.
Definition: sion_common.c:219
int sion_ensure_free_space(int sid, sion_int64 bytes)
Funtion to ensure that enough space is available for writing.
Definition: sion_common.c:1053
int sion_feof(int sid)
Function that indicates whether the end of file is reached for this task.
Definition: sion_common.c:809
void * _sion_vcdtovcon(int sid)
Definition: sion_fd.c:53
int _sion_vcdtype(int sid)
Definition: sion_fd.c:58
int _sion_newvcd(void *data, int type)
Definition: sion_fd.c:43
#define SION_FILEDESCRIPTOR
Definition: sion_fd.h:17
int _sion_file_stat_file2(const char *fname, unsigned int apiflag)
Check if file exists with appropriate low-level API.
Definition: sion_file.c:329
int _sion_file_flush(_sion_fileptr *sion_fileptr)
Flush data to file.
Definition: sion_file.c:434
int _sion_file_close(_sion_fileptr *sion_fileptr)
Close file and destroys fileptr structure.
Definition: sion_file.c:178
sion_int64 _sion_file_set_position(_sion_fileptr *sion_fileptr, sion_int64 startpointer)
Set new position in file.
Definition: sion_file.c:367
_sion_fileptr * _sion_file_open(const char *fname, unsigned int flags, unsigned int addflags)
Create and open a new file for writing.
Definition: sion_file.c:53
#define SION_FILE_FLAG_READ
Definition: sion_file.h:30
#define SION_FILE_FLAG_ANSI
Definition: sion_file.h:25
#define SION_FILE_FLAG_POSIX
Definition: sion_file.h:27
int _sion_init_filedesc(_sion_filedesc *sion_filedesc)
Initialize the sion file description.
Definition: sion_filedesc.c:37
int _sion_alloc_filedesc_arrays(_sion_filedesc *sion_filedesc)
Allocate memory for the internal sion arrays.
int _sion_free_filedesc_arrays(_sion_filedesc *sion_filedesc)
free memory for the internal sion arrays
_sion_filedesc * _sion_alloc_filedesc(void)
Allocates memory for internal sion structure.
#define SION_FILEMODE_WRITE
Definition: sion_filedesc.h:38
#define SION_FILEMODE_READ
Definition: sion_filedesc.h:37
#define SION_FILESTATE_SEROPEN
Definition: sion_filedesc.h:29
int _sion_parclose_generic(int sid, int rank, int ntasks, int mapping_size, sion_int32 *mapping, int flag, _sion_generic_gendata *sion_gendata, _sion_generic_buddy *buddy_data)
Internal function to close parallel opened SION file.
int _sion_paropen_generic_one_file(int sid, char *fname, _sion_flags_store *flags_store, char *prefix, int *numFiles, int *filenumber, sion_int64 *chunksize, sion_int32 *fsblksize, int rank, int ntasks, int *globalrank, int flag, FILE **fileptr, _sion_generic_gendata *sion_gendata, _sion_generic_buddy *buddy_data)
Generic parallel open of one direct access file.
char * _sion_get_multi_filename(const char *fname, int filenumber)
generates the multi filename
int _sion_open_read(const char *fname, sion_int64 file_mode_flags, int read_all, int *ntasks, int *nfiles, sion_int64 **chunksizes, sion_int32 *fsblksize, int **globalranks, FILE **fileptr)
internal sion serial open function for reading on one or more files
int _sion_read_header_var_part(_sion_filedesc *sion_filedesc)
Read the second part of SION Meta Block 1.
int _sion_read_header_fix_part(_sion_filedesc *sion_filedesc)
Read part of the SION Meta Block 1.
Sion Time Stamp Header.
Sion File Descriptor Structure.
Definition: sion_filedesc.h:79
sion_int32 fileptr_exported
sion_int64 * all_globalranks
_sion_fileptr * fileptr
Definition: sion_filedesc.h:82