SIONlib  1.7.0
Scalable I/O library for parallel access to task-local files
sion_omp_gen.c
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2 ** SIONLIB http://www.fz-juelich.de/jsc/sionlib **
3 *****************************************************************************
4 ** Copyright (c) 2008-2016 **
5 ** Forschungszentrum Juelich, Juelich Supercomputing Centre **
6 ** **
7 ** See the file COPYRIGHT in the package base directory for details **
8 ****************************************************************************/
17 #include <stdlib.h>
18 #include <stdio.h>
19 #include <stdarg.h>
20 #include <string.h>
21 #include <time.h>
22 
23 #include <sys/time.h>
24 
25 #include <sys/types.h>
26 #include <fcntl.h>
27 
28 #include <unistd.h>
29 
30 #include "omp.h"
31 
32 #include "sion.h"
33 #include "sion_debug.h"
34 #include "sion_error_handler.h"
35 #include "sion_internal.h"
36 #include "sion_fd.h"
37 #include "sion_filedesc.h"
38 #include "sion_printts.h"
39 #include "sion_flags.h"
40 
41 #include "sion_generic.h"
42 
43 #include "sion_omp.h"
44 #include "sion_omp_internal_gen.h"
45 #include "sion_omp_cb_gen.h"
46 #include "sion_lock.h"
47 
48 
49 #ifdef SION_OMP
50 
51 
52 sion_int32 _sion_omp_api_aid = -1;
53 static omp_lock_t _sion_omp_lock_data;
54 
55 int _sion_omp_user_lock(void * data) {
56  int rc=SION_SUCCESS;
57  omp_set_lock(&_sion_omp_lock_data);
58  return(rc);
59 }
60 int _sion_omp_user_unlock(void * data) {
61  int rc=SION_SUCCESS;
62  omp_unset_lock(&_sion_omp_lock_data);
63  return(rc);
64 }
65 
83 int sion_paropen_omp(const char *fname,
84  const char *file_mode,
85  sion_int64 *chunksize,
86  sion_int32 *fsblksize,
87  int *globalrank,
88  FILE **fileptr,
89  char **newfname)
90 {
91  int sid = SION_ID_UNDEF;
92  int filenumber, num_threads, thread_num;
93  int numFiles=1,gtasks, gRank, lRank, lSize;
94  _omp_api_commdata *gen_gcomm;
95  _sion_flags_store* flags_store = NULL;
96 
97  thread_num = omp_get_thread_num();
98  num_threads = omp_get_num_threads();
99 
100  #pragma omp master
101  {
102  _sion_debug_set_query_thread_num_function(omp_get_thread_num);
103  _sion_error_set_query_thread_num_function(omp_get_thread_num);
104  omp_init_lock(&_sion_omp_lock_data);
105  sion_lock_register_lock_callbacks(_sion_omp_user_lock,_sion_omp_user_unlock,&_sion_omp_lock_data);
106  }
107  {
108  #pragma omp barrier
109  }
110 
111  DPRINTFP((1, "sion_paropen_omp", thread_num, "enter parallel open of file %s\n", fname));
112 
113  flags_store = _sion_parse_flags(file_mode);
114  if ( ! flags_store ) {
115  return(_sion_errorprint_omp(SION_ID_NOT_VALID,_SION_ERROR_RETURN,
116  "sion_paropen_omp: could not parse file mode in %s, aborting ...\n", file_mode));
117  }
118 
119  if (flags_store->mask&_SION_FMODE_WRITE) {
120  /* file mode WRITE */
121  *globalrank = thread_num;
122  }
123  _sion_flags_destroy_store(&flags_store);
124 
125  #pragma omp master
126  {
127  /* register callbacks for generic interface */
128  if(_sion_omp_api_aid<0) _sion_omp_api_aid=_sion_register_callbacks_omp();
129  }
130 
131  /* create generic communicator container */
132  gen_gcomm = (_omp_api_commdata *) malloc(sizeof(_omp_api_commdata));
133  if (gen_gcomm == NULL) {
134  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,
135  "cannot allocate omp internal data structure of size %lu (_omp_api_commdata), aborting ...\n",
136  (unsigned long) sizeof(_omp_api_commdata)));
137  }
138  gen_gcomm->commset=1;
139  gen_gcomm->thread_num=thread_num;
140  gen_gcomm->num_threads=num_threads;
141 
142  /* sync to ensure that aid is accessible */
143  _sion_omp_barrier_cb(gen_gcomm);
144 
145 
146  lRank=gRank=thread_num;
147  lSize=gtasks=num_threads;
148  filenumber=0;
149  numFiles=1;
150 
151  DPRINTFP((1, "sion_paropen_omp", gRank, "enter parallel open of %d files (current name %s) in %s mode\n", numFiles, fname, file_mode));
152  sid = sion_generic_paropen(_sion_omp_api_aid, fname, file_mode, chunksize, fsblksize, gen_gcomm, gRank, gtasks,
153  &filenumber, &numFiles, &lRank, &lSize, fileptr, newfname);
154  DPRINTFP((1, "sion_paropen_omp", gRank, "leave parallel open of %d files in %s mode #tasks=%d sid=%d\n", numFiles, file_mode, lSize, sid));
155 
156 
157  /* test return code from internal open */
158  if ( sid == SION_ID_NOT_VALID ) {
159  return(_sion_errorprint_omp(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"sion_paropen_omp: invalid return code from internal open %d", sid));
160  }
161 
162  DPRINTFP((1, "sion_paropen_omp", thread_num, "leave parallel open of file %s sid=%d\n", fname, sid));
163 
164  return (sid);
165 }
166 
173 int sion_parclose_omp(int sid)
174 {
175  int rc = SION_SUCCESS;
176  ONLY_DEBUG(int thread_num;)
177  _sion_filedesc *sion_filedesc;
178 
179  if ( (sid<0) || (_sion_vcdtype(sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc = _sion_vcdtovcon(sid))) {
180  return(_sion_errorprint_omp(SION_NOT_SUCCESS,_SION_ERROR_RETURN,"sion_parclose_omp: invalid sion_filedesc %d", sid));
181  }
182 
183  ONLY_DEBUG(thread_num = omp_get_thread_num();)
184 
185  if(omp_get_num_threads()!=sion_filedesc->ntasks){
186  return(_sion_errorprint_omp(SION_NOT_SUCCESS,_SION_ERROR_RETURN,
187  "sion_parclose_omp: invalid number of OpenMP threads, %d <> %d",
188  omp_get_num_threads(), sion_filedesc->ntasks));
189  }
190 
191  DPRINTFP((1, "sion_parclose_omp", thread_num, "enter parallel close of sid %d\n", sid));
192  DPRINTFP((1, "sion_parclose_omp", thread_num, "closing %d file(s)\n", sion_filedesc->nfiles));
193 
194  rc = sion_generic_parclose(sid);
195 
196  DPRINTFP((1, "sion_parclose_omp", thread_num, "leave parallel close of sid %d rc=%d\n", sid, rc));
197  return rc;
198 }
199 
200 /* end of ifdef OMP */
201 #endif
Sion File Descriptor Structure.
Definition: sion_filedesc.h:77
int sion_generic_paropen(int aid, const char *fname, const char *file_mode, sion_int64 *chunksize, sion_int32 *fsblksize, void *gcommgroup, int grank, int gsize, int *filenumber, int *numfiles, const int *lrank, const int *lsize, FILE **fileptr, char **newfname)
Open a sion file a generic interface.
Definition: sion_generic.c:349
int sion_lock_register_lock_callbacks(int lock(void *), int unlock(void *), void *lock_data)
Function which registers callback funtions for lock and unlock internal access to shared data structu...
Definition: sion_common.c:1181
int _sion_vcdtype(int sid)
Definition: sion_fd.c:56
_sion_flags_store * _sion_parse_flags(const char *flags)
Parse flags and return a flags store with key value pairs.
Definition: sion_flags.c:288
void * _sion_vcdtovcon(int sid)
Definition: sion_fd.c:51
#define SION_FILEDESCRIPTOR
Definition: sion_fd.h:17
callback wrappers for OMP thread safe fd manipulation
Sion Time Stamp Header.