SIONlib  1.7.4
Scalable I/O library for parallel access to task-local files
sion_generic_buddy.c
1 /****************************************************************************
2 ** SIONLIB http://www.fz-juelich.de/jsc/sionlib **
3 *****************************************************************************
4 ** Copyright (c) 2008-2019 **
5 ** Forschungszentrum Juelich, Juelich Supercomputing Centre **
6 ** **
7 ** See the file COPYRIGHT in the package base directory for details **
8 ****************************************************************************/
9 /*
10  *
11  * \brief Internal Functions(parallel)
12  */
13 
14 #define _XOPEN_SOURCE 700
15 
16 #include <stdlib.h>
17 #include <stdio.h>
18 #include <string.h>
19 #include <unistd.h>
20 
21 #include "sion.h"
22 #include "sion_debug.h"
23 #include "sion_error_handler.h"
24 #include "sion_file.h"
25 #include "sion_filedesc.h"
26 #include "sion_fd.h"
27 #include "sion_metadata.h"
28 #include "sion_internal.h"
29 #include "sion_printts.h"
30 #include "sion_flags.h"
31 
32 #include "sion_buffer.h"
33 
34 #include "sion_filedesc.h"
35 #include "sion_keyvalue.h"
36 
37 #include "sion_generic_internal.h"
39 #include "sion_generic_buddy.h"
40 
41 
63 #define DFUNCTION "_sion_paropen_generic_buddy"
64 int _sion_paropen_generic_buddy(
65  int sid,
66  const char *fname,
67  _sion_flags_store *flags_store,
68  char *prefix,
69  int *numFiles,
70  int *filenumber,
71  sion_int64 *chunksize,
72  sion_int32 *fsblksize,
73  int rank,
74  int ntasks,
75  int *globalrank,
76  FILE **fileptr,
77  _sion_generic_gendata *sion_gendata )
78 {
79  int rc = SION_SUCCESS;
80  int b, capability, pass, buddylevel;
81  sion_int32 file_globalrank;
82  sion_int64 file_chunksize;
83  char *buddy_fn, *nfname=NULL;
84  _sion_filedesc *sion_filedesc;
85  _sion_generic_buddy *buddies, *buddyptr;
86  _sion_generic_apidesc *sion_apidesc;
87 
88  buddylevel = atoi(_sion_flags_get(flags_store,"buddy")->val);
89  if (buddylevel==0) buddylevel=1; /* default */
90 
91  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "allocate memory for %d buddy levels\n", buddylevel));
92 
93  buddies = (_sion_generic_buddy *) malloc(buddylevel * sizeof(_sion_generic_buddy));
94  if (buddies == NULL) {
95  return(_sion_errorprint(SION_NOT_SUCCESS,_SION_ERROR_RETURN,"cannot allocate buddies structure of size %lu (_sion_generic_buddy), aborting ...\n",
96  (unsigned long) sizeof(_sion_generic_buddy)));
97  }
98  buddies->numgroups=0;
99 
100  buddy_fn = calloc(SION_FILENAME_LENGTH+10,1);
101  if (buddy_fn == NULL) {
102  free(buddies);
103  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: cannot allocate temporary memory of size %lu (buddy_fn), aborting ...\n",
104  (unsigned long) SION_FILENAME_LENGTH+10));
105  }
106 
107  /* get pointer to internal datastructures */
108  sion_apidesc=sion_gendata->apidesc;
109 
110  if (flags_store->mask&_SION_FMODE_WRITE) {
111 
112  /* STEP1: WRITE open normal file */
113  nfname=(sion_apidesc->get_multi_filename_cb?sion_apidesc->get_multi_filename_cb:_sion_get_multi_filename)
114  (fname,sion_gendata->filenumber);
115  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "call parallel open of %d files (current name %s)\n",
116  sion_gendata->numfiles, nfname));
117  rc=_sion_paropen_generic_one_file(sid, nfname, flags_store, prefix,
118  &sion_gendata->numfiles, &sion_gendata->filenumber,
119  chunksize, fsblksize,
120  sion_gendata->lrank, sion_gendata->lsize, globalrank,
121  _SION_INTERNAL_FLAG_BUDDY_NORMAL, fileptr, sion_gendata, NULL);
122  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "leave parallel open of %d files in #tasks=%d sid=%d globalrank=%d\n", sion_gendata->numfiles,
123  sion_gendata->lsize, sid, sion_gendata->grank));
124  free(nfname);
125 
126  /* test sid and get internal data structure */
127  if ((rc<0) || (sid<0) || (_sion_vcdtype(sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc = _sion_vcdtovcon(sid))) {
128  free(buddies);
129  free(buddy_fn);
130  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: invalid sion_filedesc %d", sid));
131  }
132 
133  /* store additional data */
134  sion_filedesc->buddies=buddies;
135 
136  capability=sion_apidesc->get_capability_cb(sion_gendata->comm_data_global);
137 
138  /* open buddy files */
139  for(b=0;b<sion_filedesc->buddylevel;b++) {
140  buddyptr=&buddies[b];
141 
142  /* create communicators */
143  buddyptr->buddy_send.commgroup=NULL; buddyptr->buddy_coll.commgroup=NULL;
144  rc=_sion_buddy_map(sion_gendata,capability,b+1,&buddyptr->buddy_send,&buddyptr->buddy_coll);
145 
146  /* file name */
147  sprintf(buddy_fn,"%s_BUDDY_%02d", fname,b);
148 
149  /* open files */
150  for(pass=1;pass<=_SION_BW_SCHED_NUM_PASSES;pass++) {
151 
152  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO pass=%d [grank=%2d] op=%d\n",pass,*globalrank,
153  _sion_buddy_bwsched(buddyptr->buddy_send.groupnum, sion_gendata->numfiles, pass)));
154 
155 
156  switch (_sion_buddy_bwsched(buddyptr->buddy_send.groupnum, sion_gendata->numfiles, pass)) {
157  case _SION_BW_SCHED_ACTIONA:
158  /* parameter */
159  file_globalrank=-1*(*globalrank+1);
160  file_chunksize=0;
161  nfname=(sion_apidesc->get_multi_filename_cb?sion_apidesc->get_multi_filename_cb:_sion_get_multi_filename)
162  (buddy_fn,buddyptr->buddy_coll.filenum);
163  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO call open_one_file COLL [gendata: b=%d grank=%2d, group=%d of %d, lrank=%d of %d] fn=%s (%d)\n",
164  b,*globalrank, buddyptr->buddy_coll.groupnum,sion_gendata->numfiles,
165  buddyptr->buddy_coll.rank, buddyptr->buddy_coll.size,nfname,buddyptr->buddy_coll.filenum));
166  buddyptr->buddy_coll.sid = _sion_newvcd(NULL,SION_FILEDESCRIPTOR);
167  rc=_sion_paropen_generic_one_file(buddyptr->buddy_coll.sid, nfname, flags_store, prefix,
168  &sion_gendata->numfiles, &buddyptr->buddy_coll.filenum,
169  &file_chunksize, fsblksize,
170  buddyptr->buddy_coll.rank,buddyptr->buddy_coll.size, &file_globalrank,
171  _SION_INTERNAL_FLAG_BUDDY_COLL, NULL, sion_gendata,
172  buddyptr);
173  free(nfname);
174  break;
175  case _SION_BW_SCHED_ACTIONB:
176  /* parameter */
177  file_globalrank=*globalrank;
178  file_chunksize=*chunksize;
179  nfname=(sion_apidesc->get_multi_filename_cb?sion_apidesc->get_multi_filename_cb:_sion_get_multi_filename)
180  (buddy_fn,buddyptr->buddy_send.filenum);
181  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO call open_one_file SEND [gendata: b=%d grank=%2d, group=%d of %d, lrank=%d of %d] fn=%s \n",
182  b,*globalrank, buddyptr->buddy_send.groupnum,sion_gendata->numfiles,
183  buddyptr->buddy_send.rank, buddyptr->buddy_send.size,nfname));
184  buddyptr->buddy_send.sid = _sion_newvcd(NULL,SION_FILEDESCRIPTOR);
185  rc=_sion_paropen_generic_one_file(buddyptr->buddy_send.sid, nfname, flags_store, prefix,
186  &sion_gendata->numfiles, &buddyptr->buddy_send.filenum,
187  &file_chunksize, fsblksize,
188  buddyptr->buddy_send.rank,buddyptr->buddy_send.size, &file_globalrank,
189  _SION_INTERNAL_FLAG_BUDDY_SEND, NULL, sion_gendata,
190  buddyptr);
191  free(nfname);
192  break;
193  default:
194  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO no-op [grank=%2d]\n",*globalrank));
195  break;
196  } /* switch */
197  } /* for pass */
198  } /* for buddies */
199 
200  } else if (flags_store->mask&_SION_FMODE_READ) {
201  int filefound, lgroup=*filenumber, root=0, task, tmpsize, group, masterfile_found;
202  sion_int32 filenumber, numfiles, lrank, lsize, file, file_lgroup, myrole, steprank;
203  sion_int32 helpint32=0, numsteps=0, numgroups=0, numreaderinthisfile;
204  sion_int32 *sion_tmpintfield1 = NULL; /* allocated on rank 0 */
205  /* sion_int32 *sion_tmpintfield2 = NULL; */ /* allocated on lranl-0 that has access to master file */
206 
207  int *stepvectorlist[MAXREADSTEPS]; /* to be changed in an dynamic list */
208  int *stepvector, readercount=0, readyflag=0, datafound=0;
209  int stepcount_coll,stepcount_collreader,stepcount_reader,stepcount_reader_rank,stepcount_noreader,stepcount_noreader_rank, groupcounter;
210  int step,fit,newrank;
211  _sion_generic_buddy_info *buddy_info;
212  sion_int32 helpint7[7];
213 
214  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "enter buddy open in read mode\n"));
215 
216  if(sion_gendata->grank==0) {
217  tmpsize=1*sion_gendata->gsize;
218  sion_tmpintfield1 = (sion_int32 *) malloc(tmpsize * sizeof(sion_int32));
219  if (sion_tmpintfield1 == NULL) {
220  free(buddies);
221  free(buddy_fn);
222  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: cannot allocate temporary memory of size %lu (sion_tmpintfield), aborting ...\n",
223  (unsigned long) tmpsize * sizeof(sion_int32)));
224  }
225  }
226 
227  /* Loop1: over all file sets (normal, buddy1, buddy2) until all have found their data chunk */
228  groupcounter=0;
229  for(b=-1; ( (b<buddylevel) && (!readyflag));b++) {
230 
231  /* determine filename and check for existence of master file on each lrank=0 */
232  if(b==-1) sprintf(buddy_fn,"%s", fname);
233  else sprintf(buddy_fn,"%s_BUDDY_%02d", fname,b);
234  nfname=(sion_apidesc->get_multi_filename_cb?sion_apidesc->get_multi_filename_cb:_sion_get_multi_filename)(buddy_fn,0);
235  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY[%2d] start checking buddy level (file=%s)\n",b,nfname));
236 
237  filefound=0;
238  if(sion_gendata->lrank==0) {
239  if(_sion_file_stat_file(nfname)) {
240  filefound=1;
241  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "check for existence of file %s --> file found\n",nfname));
242  }
243  }
244 
245  /* distribute info about master file to all others (root=<tasknum> or -1 if file not found) */
246  helpint32=filefound;
247  sion_gendata->apidesc->gatherr_cb(&helpint32, sion_tmpintfield1, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
248  if (sion_gendata->grank == 0) {
249  root=-1;
250  if (sion_tmpintfield1 == NULL) {
251  free(buddies);
252  free(buddy_fn);
253  return(_sion_errorprint(SION_NOT_SUCCESS,_SION_ERROR_ABORT, DFUNCTION ": gatherr_cb returned sion_tmpintfield1 == NULL"));
254  }
255  for(task=0;task<sion_gendata->gsize;task++) {
256  if(sion_tmpintfield1[task]==1) root=task;
257  }
258  helpint32=root;
259  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "after scan master: root for this file is %d #tasks=%d\n",root,sion_gendata->gsize));
260  }
261  sion_gendata->apidesc->bcastr_cb(&helpint32, sion_gendata->comm_data_global, _SION_INT32, 1, 0); root=helpint32;
262  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "root for this file is %d\n",root));
263 
264  /* get mapping from file and distribute it */
265  if(root!=-1) {
266  _sion_generic_buddy_get_and_distribute_info_from_file(sion_gendata,nfname,root, &filenumber, &numfiles, &lrank, &lsize);
267  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY[%d] after read mapping file=%d of %d, lrank=%d of %d\n",b,filenumber, numfiles, lrank, lsize));
268  masterfile_found=1;
269  } else {
270  filenumber=lrank=lsize=-1;
271  masterfile_found=0;
272  }
273  free(nfname);
274 
275  /* numfiles will be defined from from input parameter, other info will be defined on-the-fly */
276  numfiles=*numFiles;
277  DPRINTFP((32, DFUNCTION, sion_gendata->grank, "Info avail: b=%d numfiles=%d root=%d lgroup=%d\n",b,numfiles,root,lgroup));
278 
279  /* Loop2: for each physical file of this file set */
280  for(file=0;( (file<numfiles) && (!readyflag) );file++) {
281 
282  /* check physical file */
283  nfname=(sion_apidesc->get_multi_filename_cb?sion_apidesc->get_multi_filename_cb:_sion_get_multi_filename)(buddy_fn,file);
284  filefound=-1;
285  if(sion_gendata->lrank==0) {
286  if(_sion_file_stat_file(nfname)) {
287  filefound=lgroup;
288  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "check for existence of file %s --> file found\n",nfname));
289  }
290  }
291 
292  /* gather and distribute info (root and lgroup) about file to all others (root=<tasknum> or -1 if file not found) */
293  helpint32=filefound;
294  sion_gendata->apidesc->gatherr_cb(&helpint32, sion_tmpintfield1, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
295  if (sion_gendata->grank == 0) {
296  root=-1;
297  for(task=0;task<sion_gendata->gsize;task++) {
298  if(sion_tmpintfield1[task]>-1) {
299  root=task;
300  file_lgroup=sion_tmpintfield1[task];
301  }
302  }
303  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "after scan one file: root for this file is %d file_lgroup=%d\n",root,file_lgroup));
304  }
305  if (sion_gendata->grank == 0) helpint32=root;
306  sion_gendata->apidesc->bcastr_cb(&helpint32, sion_gendata->comm_data_global, _SION_INT32, 1, 0); root=helpint32;
307  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "root for this file is %d\n",root));
308 
309  if(root>=0) {
310  /* file found */
311 
312  if(!masterfile_found) {
313  /* get avail info from file: lrank/lsize for local tasks */
314  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY[%d] befre read globalranks file=%d of %d, lrank=%d of %d\n",
315  b, filenumber, numfiles, lrank, lsize));
316  _sion_generic_buddy_get_and_distribute_info_from_one_file(sion_gendata, nfname, root, &filenumber, &numfiles, &lrank, &lsize);
317  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY[%d] after read globalranks file=%d of %d, lrank=%d of %d\n",
318  b, filenumber, numfiles, lrank, lsize));
319  }
320 
321  /* bcast lgroup */
322  if (sion_gendata->grank == 0) helpint32=file_lgroup;
323  sion_gendata->apidesc->bcastr_cb(&helpint32, sion_gendata->comm_data_global, _SION_INT32, 1, 0); file_lgroup=helpint32;
324  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "file_lgroup for this file is %d\n",file_lgroup));
325 
326  /* determine my role for this file */
327  myrole=SION_ROLE_NONE; /* not acting on that file */
328  if((filenumber==file) && (!datafound)) {
329  datafound=1; /* fantastic ... */
330  if(sion_gendata->grank==root) myrole=SION_ROLE_COLLECTOR_READER; /* collector and reader */
331  else myrole=SION_ROLE_READER; /* reader */
332  } else {
333  if(sion_gendata->grank==root) myrole=SION_ROLE_COLLECTOR; /* collector */
334  else if(file_lgroup==lgroup) myrole=SION_ROLE_NOREADER; /* task on the same lgroup but not collector */
335  }
336 
337  /* collect on rank 0 info about each task acting on this file */
338  helpint32=myrole;
339  sion_gendata->apidesc->gatherr_cb(&helpint32, sion_tmpintfield1, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
340 
341  /* check if at least one tasks needs data */
342  if(sion_gendata->grank == 0) {
343  numreaderinthisfile=0;
344  if (sion_tmpintfield1 == NULL) {
345  return(_sion_errorprint(SION_NOT_SUCCESS,_SION_ERROR_ABORT, DFUNCTION ": gatherr_cb returned sion_tmpintfield1 == NULL"));
346  }
347  for(task=0; ( (task<sion_gendata->gsize) ) ;task++)
348  if ( (sion_tmpintfield1[task]==SION_ROLE_COLLECTOR_READER) || (sion_tmpintfield1[task]==SION_ROLE_READER) ) numreaderinthisfile++;
349  }
350  sion_gendata->apidesc->bcastr_cb(&numreaderinthisfile, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
351 
352  if (numreaderinthisfile>0) {
353 
354  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "myrole for file %s is %s\n",nfname,_sion_buddy_role_to_str(myrole)));
355 
356  /* check for step in which the group can be created */
357  if (sion_gendata->grank == 0) {
358  /* check in existing steps if group can created there */
359  fit=0;
360  for(step=0; ( (step<numsteps) && (fit==0) ) ;step++) {
361  stepvector=stepvectorlist[step];
362  fit=1;
363  for(task=0; ( (task<sion_gendata->gsize) && (fit==1) ) ;task++) {
364  if(sion_tmpintfield1[task]!=SION_ROLE_NONE) {
365  if(stepvector[task]!=SION_ROLE_NONE) fit=0;
366  }
367  }
368  }
369  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY STEP assign: after scanning %d steps fit=%d\n",numsteps,fit));
370  if(fit==0) {
371  /* no space in available steps, create a new one */
372  stepvector = (int *) malloc(sion_gendata->gsize * sizeof(int));
373  if (stepvector == NULL) {
374  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: cannot allocate temporary memory of size %lu (stepvector), aborting ...\n",
375  (unsigned long) sion_gendata->gsize * sizeof(int)));
376  }
377  for(task=0; (task<sion_gendata->gsize);task++) stepvector[task]=SION_ROLE_NONE;
378  numsteps++;step++;
379  stepvectorlist[numsteps-1]=stepvector;
380  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY STEP assign: allocating new step %d\n",numsteps-1));
381  }
382  /* store roles in stepvector and analyse group */
383  stepcount_coll=stepcount_collreader=stepcount_reader=stepcount_noreader=0;
384  for(task=0; (task<sion_gendata->gsize);task++) {
385  if(sion_tmpintfield1[task]!=SION_ROLE_NONE) {
386  stepvector[task]=sion_tmpintfield1[task];
387  if (sion_tmpintfield1[task]==SION_ROLE_COLLECTOR) stepcount_coll++;
388  if (sion_tmpintfield1[task]==SION_ROLE_READER) {readercount++;stepcount_reader++;}
389  if (sion_tmpintfield1[task]==SION_ROLE_COLLECTOR_READER) {readercount++;stepcount_collreader++;}
390  if (sion_tmpintfield1[task]==SION_ROLE_NOREADER) stepcount_noreader++;
391  }
392  }
393  /* DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY STEP assign: stepcount_coll=%d stepcount_collreader=%d stepcount_reader=%d stepcount_noreader=%d\n", */
394  /* stepcount_coll,stepcount_collreader, stepcount_reader, stepcount_noreader)); */
395  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY STEP assign: group assigned to step %d (tasks with no data: %d)\n",numsteps-1,sion_gendata->gsize-readercount));
396  if(sion_gendata->gsize-readercount==0) readyflag=1;
397 
398  /* calculate ranks */
399  stepcount_noreader_rank = stepcount_coll;
400  stepcount_reader_rank = stepcount_noreader_rank+stepcount_noreader;
401  for(task=0; (task<sion_gendata->gsize);task++) {
402  /*DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY STEP assign1: task %d stepcount_reader_rank=%d stepcount_noreader_rank=%d %s\n",
403  task, stepcount_reader_rank, stepcount_noreader_rank,_sion_buddy_role_to_str(sion_tmpintfield1[task])));*/
404  if(sion_tmpintfield1[task]==SION_ROLE_NONE) newrank=-1;
405  if(sion_tmpintfield1[task]==SION_ROLE_COLLECTOR) newrank=0;
406  if(sion_tmpintfield1[task]==SION_ROLE_COLLECTOR_READER) newrank=stepcount_reader_rank++;
407  if(sion_tmpintfield1[task]==SION_ROLE_NOREADER) newrank=stepcount_noreader_rank++;
408  if(sion_tmpintfield1[task]==SION_ROLE_READER) newrank=stepcount_reader_rank++;
409  sion_tmpintfield1[task]=newrank;
410  /* DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDY STEP assign2: rank %d to task %d stepcount_reader_rank=%d stepcount_noreader_rank=%d\n",
411  sion_tmpintfield1[task],task, stepcount_reader_rank, stepcount_noreader_rank));*/
412  }
413  } /* if(rank==0) --> stepvector handling */
414 
415  /* scatter rank info to tasks */
416  sion_gendata->apidesc->scatterr_cb(sion_tmpintfield1, &steprank, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
417 
418 
419  /* bcast info ), ready flag, size, collsize, to_index */
420  if (sion_gendata->grank == 0) {
421 
422  helpint7[0]=step-1; /* step number */
423  helpint7[1]=readyflag; /* readyflag */
424  helpint7[2]=stepcount_coll+stepcount_collreader+stepcount_reader+stepcount_noreader; /* size */
425  helpint7[3]=stepcount_collreader+stepcount_reader; /* collsize */
426  helpint7[4]=stepcount_coll+stepcount_noreader; /* from_index */
427  helpint7[5]=stepcount_coll+stepcount_noreader+stepcount_collreader+stepcount_reader-1; /* to_index */
428  helpint7[6]=groupcounter++; /* unique Id of group */
429  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "define group #%d (step=%d, readyflag=%d, size=%d, collsize=%d, from=%d, to=%d) \n",
430  helpint7[6], helpint7[0], helpint7[1], helpint7[2], helpint7[3], helpint7[4], helpint7[5]));
431  }
432  sion_gendata->apidesc->bcastr_cb(helpint7, sion_gendata->comm_data_global, _SION_INT32, 7, 0);
433  readyflag=helpint7[1];
434 
435  /* create new data structure for storing info about group if task is acting in this group */
436  if(myrole!=SION_ROLE_NONE) {
437  buddy_info = (_sion_generic_buddy_info *) malloc(sizeof(_sion_generic_buddy_info));
438  if (buddy_info == NULL) {
439  free(buddies);
440  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: cannot allocate temporary memory of size %lu (buddy_info), aborting ...\n",
441  (unsigned long) sizeof(_sion_generic_buddy_info)));
442  }
443  buddies->groups[buddies->numgroups]=buddy_info; buddies->numgroups++;
444  buddy_info->groupid=helpint7[6];
445  buddy_info->stepnum=helpint7[0];
446  buddy_info->rank=steprank;
447  buddy_info->size=helpint7[2];
448  buddy_info->commgroup=NULL; /* will be created later */
449  buddy_info->collsize=helpint7[3];
450  buddy_info->from_index=helpint7[4];
451  buddy_info->to_index=helpint7[5];
452  buddy_info->myrole=myrole;
453  buddy_info->bnum=b;
454  if( (myrole==SION_ROLE_READER) || (myrole==SION_ROLE_COLLECTOR_READER)) {
455  buddy_info->filelrank=lrank;
456  } else {
457  buddy_info->filelrank=-1;
458  }
459  buddy_info->filenum=file;
460  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "create group #%d (step=%d, rank=%d, size=%d, collsize=%d, from=%2d, to=%2d) (bnum=%2d file# %2d) with role %s \n",
461  buddy_info->groupid, buddy_info->stepnum, buddy_info->rank, buddy_info->size, buddy_info->collsize,
462  buddy_info->from_index, buddy_info->to_index, buddy_info->bnum, buddy_info->filenum, _sion_buddy_role_to_str(buddy_info->myrole)));
463 
464  } /* create group */
465  } /* (numreaderinthisfile>0) */
466  } /* if (file found on one of the lgroups) */
467  } /* end of loop over physical files of file set */
468  } /* end of loop over file sets (buddies) */
469 
470  if(!readyflag) {
471  /* some tasks could not find their data */
472  free(buddies);
473  free(buddy_fn);
474  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: cannot open file, not all files available"));
475  }
476 
477  /* bcast max. number of steps */
478  sion_gendata->apidesc->bcastr_cb(&numsteps, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
479  buddies->numsteps=numsteps;
480 
481  /* bcast max. number of groups */
482  if (sion_gendata->grank == 0) numgroups=groupcounter;
483  sion_gendata->apidesc->bcastr_cb(&numgroups, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
484 
485  /* build commgroups */
486  for(step=0;step<numsteps;step++) {
487  /* search for group with this step */
488  group=-1;
489  for(b=0; ( (b<buddies->numgroups) && (group==-1) ); b++ ) {
490 
491  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "check group #%d of %d in stepnum=%d step=%d\n",b, buddies->numgroups, buddies->groups[b]->stepnum,step));
492  if (buddies->groups[b]->stepnum==step) group=b;
493  }
494 
495  if(group!=-1) {
496  /* create group for step */
497  buddy_info=buddies->groups[group];
498  rc=sion_gendata->apidesc->create_lcg_cb(&buddy_info->commgroup,sion_gendata->comm_data_global,
499  sion_gendata->grank,sion_gendata->gsize,
500  buddy_info->rank,buddy_info->size,
501  buddy_info->groupid,numgroups);
502  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_created active [grank=%2d of %2d, group=%2d of %2d, lrank=%2d of %2d]\n",
503  sion_gendata->grank,sion_gendata->gsize, buddy_info->groupid,numgroups, buddy_info->rank,buddy_info->size));
504  } else {
505  /* nothing to do in this step, create dummy comm */
506  void *dummycommgroup=NULL;
507  rc=sion_gendata->apidesc->create_lcg_cb(&dummycommgroup,sion_gendata->comm_data_global,
508  sion_gendata->grank,sion_gendata->gsize,
509  0,1,
510  -1,numgroups);
511  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_created dummy [grank=%2d of %2d, group=%2d of %2d, lrank=%2d of %2d]\n",
512  sion_gendata->grank,sion_gendata->gsize,
513  -1,numgroups,
514  0,1 ));
515  }
516 
517 
518  if(group!=-1) {
519  /* open file */
520  buddy_info=buddies->groups[group];
521  buddies->currentgroup=group;
522 
523  if(buddy_info->bnum==-1) sprintf(buddy_fn,"%s", fname);
524  else sprintf(buddy_fn,"%s_BUDDY_%02d", fname,buddy_info->bnum);
525  nfname=(sion_apidesc->get_multi_filename_cb?sion_apidesc->get_multi_filename_cb:_sion_get_multi_filename)(buddy_fn,buddy_info->filenum);
526 
527  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "open file for group #%d %s [step=%d grank=%2d of %2d, lrank=%2d of %2d filelrank=%2d]\n",
528  buddy_info->groupid,nfname,buddy_info->stepnum,
529  sion_gendata->grank,sion_gendata->gsize, buddy_info->rank,buddy_info->size,buddy_info->filelrank));
530 
531  /* test if tsk is a reader, a task is only in one step a reader */
532  if( (buddy_info->myrole == SION_ROLE_READER)
533  || (buddy_info->myrole == SION_ROLE_COLLECTOR_READER)) {
534  buddy_info->sid=sid; /* use already defined sid, this will be the master data structure */
535  rc=_sion_paropen_generic_one_file(buddy_info->sid, nfname, flags_store, prefix,
536  &sion_gendata->numfiles, &buddy_info->filenum,
537  chunksize, fsblksize,
538  buddy_info->rank, buddy_info->size, &sion_gendata->grank,
539  _SION_INTERNAL_FLAG_BUDDY_READ, NULL, sion_gendata,
540  buddies);
541 
542  /* store internal buddy data structure */
543  /* test sid and get internal data structure */
544  if ((rc<0) || (sid<0) || (_sion_vcdtype(sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc = _sion_vcdtovcon(sid))) {
545  free(buddy_fn);
546  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: invalid sion_filedesc %d", sid));
547  }
548 
549  /* store additional data */
550  sion_filedesc->buddies=buddies;
551 
552  } else {
553  sion_int64 dummy_chunksize;
554  sion_int32 dummy_fsblksize;
555  buddy_info->sid = _sion_newvcd(NULL,SION_FILEDESCRIPTOR); /* create a new sid */
556  rc=_sion_paropen_generic_one_file(buddy_info->sid, nfname, flags_store, prefix,
557  &sion_gendata->numfiles, &buddy_info->filenum,
558  &dummy_chunksize, &dummy_fsblksize,
559  buddy_info->rank, buddy_info->size, &sion_gendata->grank,
560  _SION_INTERNAL_FLAG_BUDDY_READ, NULL, sion_gendata,
561  buddies);
562 
563  }
564 
565  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO afteropen [grank=%2d step=%d] rc=%d\n",sion_gendata->grank,step,rc));
566  free(nfname);
567 
568  } else {
569  /* nothing to do in this step */
570  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO no-op [grank=%2d]\n",sion_gendata->grank));
571  }
572 
573  /* barrier between steps */
574  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO beforegbarrier [grank=%2d]\n",sion_gendata->grank));
575  sion_apidesc->barrier_cb(sion_gendata->comm_data_global);
576  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO aftergbarrier [grank=%2d]\n",sion_gendata->grank));
577 
578 
579  } /* for steps */
580 
581 
582  } else {
583  free(buddies);
584  free(buddy_fn);
585  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_paropen_generic_buddy: unknown file mode"));
586  }
587  /* 'buddies' is still used later and should not be freed here. */
588  /* free(buddies); */
589  free(buddy_fn);
590  sion_apidesc->barrier_cb(sion_gendata->comm_data_global);
591 
592 
593  return(rc);
594 }
595 #undef DFUNCTION
596 
597 
609 #define DFUNCTION "_sion_parclose_generic_buddy"
610 int _sion_parclose_generic_buddy(int sid,
611  int rank,
612  int ntasks,
613  int mapping_size,
614  sion_int32 *mapping,
615  _sion_generic_gendata *sion_gendata) {
616  int rc=SION_SUCCESS;
617  _sion_filedesc *sion_filedesc;
618  /* _sion_generic_apidesc *sion_apidesc; */
619  _sion_generic_buddy *buddies, *buddyptr;
620  int b_mapping_size=0,group,step;
621  sion_int32 *b_mapping=NULL;
622  _sion_generic_buddy_info *buddy_info;
623 
624  int b, pass;
625 
626  /* obtain pointers to internal data structures */
627  if ( (sid<0) || (_sion_vcdtype(sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc = _sion_vcdtovcon(sid))) {
628  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_parclose_generic_buddy: invalid sion_filedesc %d", sid));
629  }
630  /* sion_apidesc=sion_gendata->apidesc; */
631  buddies=sion_filedesc->buddies;
632 
633 
634  if (sion_filedesc->mode == SION_FILEMODE_WRITE) {
635 
636  /* close buddy files */
637  for(b=0;b<sion_filedesc->buddylevel;b++) {
638  buddyptr=&buddies[b];
639 
640 
641  /* collect mapping */
642  _sion_generic_collect_mapping_buddy(buddyptr, sion_gendata, &b_mapping_size, &b_mapping);
643 
644 
645  /* close files */
646  for(pass=1;pass<=_SION_BW_SCHED_NUM_PASSES;pass++) {
647 
648  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYC pass=%d [grank=%2d] op=%d\n",pass,sion_gendata->grank,
649  _sion_buddy_bwsched(buddyptr->buddy_send.groupnum, sion_gendata->numfiles, pass)));
650 
651  switch (_sion_buddy_bwsched(buddyptr->buddy_send.groupnum, sion_gendata->numfiles, pass)) {
652  case _SION_BW_SCHED_ACTIONA:
653  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYc call parallel close COLL [gendata: grank=%2d, group=%d of %d, lrank=%d of %d]\n",
654  sion_gendata->grank, buddyptr->buddy_coll.groupnum,sion_gendata->numfiles,
655  buddyptr->buddy_coll.rank, buddyptr->buddy_coll.size));
656  _sion_parclose_generic(buddyptr->buddy_coll.sid, buddyptr->buddy_coll.rank, buddyptr->buddy_coll.size,
657  b_mapping_size, b_mapping, _SION_INTERNAL_FLAG_BUDDY_COLL, sion_gendata, buddyptr );
658  break;
659  case _SION_BW_SCHED_ACTIONB:
660  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYc call parallel close SEND [gendata: grank=%2d, group=%d of %d, lrank=%d of %d]\n",
661  sion_gendata->grank, buddyptr->buddy_send.groupnum,sion_gendata->numfiles,
662  buddyptr->buddy_send.rank, buddyptr->buddy_send.size));
663  _sion_parclose_generic(buddyptr->buddy_send.sid, buddyptr->buddy_send.rank, buddyptr->buddy_send.size,
664  0, NULL, _SION_INTERNAL_FLAG_BUDDY_SEND, sion_gendata, buddyptr );
665  break;
666  default:
667  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYC no-op [grank=%2d]\n",sion_gendata->grank));
668  break;
669  } /* switch */
670  } /* for pass */
671  } /* for buddies */
672 
673 
674  _SION_SAFE_FREE(b_mapping, NULL);
675  _SION_SAFE_FREE(buddies, NULL);
676 
677 
678  /* STEP: close normal files */
679  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "call parallel close of %d files, sid=%d\n",
680  sion_gendata->numfiles, sid));
681  rc = _sion_parclose_generic( sid, sion_filedesc->rank, sion_filedesc->ntasks, mapping_size, mapping, _SION_INTERNAL_FLAG_NORMAL,
682  sion_gendata, NULL );
683  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "leave parallel close of %d files in #tasks=%d globalrank=%d\n", sion_gendata->numfiles,
684  sion_gendata->lsize, sion_gendata->grank));
685 
686  } else if (sion_filedesc->mode == SION_FILEMODE_READ) {
687 
688  /* loop over all groups */
689  for(step=0;step<buddies->numsteps;step++) {
690  /* search for group with this step */
691  group=-1;
692  for(b=0; ( (b<buddies->numgroups) && (group==-1) ); b++ ) {
693 
694  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "check group #%d of %d %d==%d %x\n",b, buddies->numgroups, buddies->groups[b]->stepnum,step, buddies->groups[b]));
695  if (buddies->groups[b]->stepnum==step) group=b;
696  }
697  buddy_info=buddies->groups[group];
698 
699  if(group!=-1) {
700  /* call parclose for this group */
701  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "call parallel close of %d files, sid=%d\n",
702  sion_gendata->numfiles, sid));
703  buddies->currentgroup=group;
704  rc = _sion_parclose_generic( buddy_info->sid, buddy_info->rank,buddy_info->size, -1, NULL, _SION_INTERNAL_FLAG_BUDDY_READ,
705  sion_gendata, buddies );
706  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "leave parallel close of %d files in #tasks=%d globalrank=%d\n", sion_gendata->numfiles,
707  sion_gendata->lsize, sion_gendata->grank));
708  }
709  } /* step */
710 
711 
712  } else {
713  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_parclose_generic_buddy: unknown file mode"));
714  }
715 
716 
717  return(rc);
718 }
719 #undef DFUNCTION
720 
721 
730 #define DFUNCTION "_sion_coll_fwrite_buddy"
731 int _sion_coll_fwrite_buddy(const void *data,
732  size_t size,
733  size_t nitems,
734  int sid,
735  _sion_generic_gendata *sion_gendata ) {
736  int rc=SION_SUCCESS;
737  _sion_filedesc *sion_filedesc,*sion_filedesc_coll,*sion_filedesc_send;
738  _sion_generic_apidesc *sion_apidesc;
739  _sion_generic_buddy *buddies, *buddyptr;
740  sion_int64 spec[2], ownnewposition;
741  int b, pass, collector=0;
742 
743  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "enter parallel write buddy\n"));
744 
745  /* obtain pointers to internal data structures */
746  if ( (sid<0) || (_sion_vcdtype(sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc = _sion_vcdtovcon(sid))) {
747  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_coll_fwrite_buddy: invalid sion_filedesc %d", sid));
748  }
749  sion_apidesc=sion_gendata->apidesc;
750  buddies=sion_filedesc->buddies;
751 
752  /* buddy files */
753  for(b=0;b<sion_filedesc->buddylevel;b++) {
754  buddyptr=&buddies[b];
755 
756  /* get pointer to data structures */
757  if ( (buddyptr->buddy_coll.sid<0) || (_sion_vcdtype(buddyptr->buddy_coll.sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc_coll = _sion_vcdtovcon(buddyptr->buddy_coll.sid))) {
758  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_coll_fwrite_buddy: invalid sion_filedesc %d", buddyptr->buddy_coll.sid));
759  }
760  if ( (buddyptr->buddy_send.sid<0) || (_sion_vcdtype(buddyptr->buddy_send.sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc_send = _sion_vcdtovcon(buddyptr->buddy_send.sid))) {
761  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_coll_fwrite_buddy: invalid sion_filedesc %d", buddyptr->buddy_send.sid));
762  }
763 
764 
765  /* open files */
766  for(pass=1;pass<=_SION_BW_SCHED_NUM_PASSES;pass++) {
767 
768  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYw pass=%d [grank=%2d] op=%d\n",pass,sion_gendata->grank,
769  _sion_buddy_bwsched(buddyptr->buddy_send.groupnum, sion_gendata->numfiles, pass)));
770 
771  switch (_sion_buddy_bwsched(buddyptr->buddy_send.groupnum, sion_gendata->numfiles, pass)) {
772  case _SION_BW_SCHED_ACTIONA:
773  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYw call parallel write COLL [gendata: grank=%2d, group=%d of %d, lrank=%d of %d] %d..%d\n",
774  sion_gendata->grank, buddyptr->buddy_coll.groupnum,sion_gendata->numfiles,
775  buddyptr->buddy_coll.rank, buddyptr->buddy_coll.size,buddyptr->buddy_coll.from_index,buddyptr->buddy_coll.to_index));
776  spec[0]=0;spec[1]=0;
777  if(sion_filedesc_coll->rank == collector) {
778  ownnewposition=sion_filedesc_coll->currentpos;
779  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYw call parallel write COLL currentpos=%d\n",(int) sion_filedesc_coll->currentpos));
780  }
781  rc = sion_apidesc->gather_execute_cb(data,spec,2, sion_filedesc_coll->fsblksize,
782  buddyptr->buddy_coll.commgroup,collector,buddyptr->buddy_coll.from_index,buddyptr->buddy_coll.to_index,
783  buddyptr->buddy_coll.sid, _sion_generic_collective_process_write);
784  if(sion_filedesc_coll->rank == collector) {
785  _sion_file_flush(sion_filedesc_coll->fileptr);
786  _sion_file_set_position(sion_filedesc_coll->fileptr,ownnewposition);sion_filedesc_coll->currentpos=ownnewposition;
787  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYw call parallel write COLL currentpos=%d\n",(int) sion_filedesc_coll->currentpos));
788  }
789  break;
790  case _SION_BW_SCHED_ACTIONB:
791  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYw call parallel write SEND [gendata: grank=%2d, group=%d of %d, lrank=%d of %d] %d..%d\n",
792  sion_gendata->grank, buddyptr->buddy_send.groupnum,sion_gendata->numfiles,
793  buddyptr->buddy_send.rank, buddyptr->buddy_send.size,buddyptr->buddy_send.from_index,buddyptr->buddy_send.to_index));
794 
795  /* ensure free space for this block */
796  if(sion_ensure_free_space(buddyptr->buddy_send.sid,size*nitems) != SION_SUCCESS) {
797  _sion_errorprint(SION_SIZE_NOT_VALID,_SION_ERROR_RETURN,"could not ensure free space for this block, returning %d ...\n", sid);
798  spec[0]=spec[1]=-1; /* signaling error */
799  } else {
800  spec[0]=sion_filedesc_send->currentpos;
801  spec[1]=size*nitems;
802  }
803  rc = sion_apidesc->gather_execute_cb(data,spec,2, sion_filedesc_send->fsblksize,
804  buddyptr->buddy_send.commgroup,collector,buddyptr->buddy_send.from_index,buddyptr->buddy_send.to_index,
805  buddyptr->buddy_send.sid, _sion_generic_collective_process_write);
806  sion_filedesc_send->currentpos+=size*nitems;
807  break;
808  default:
809  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYw no-op [grank=%2d]\n",sion_gendata->grank));
810  break;
811  } /* switch */
812  } /* for pass */
813  } /* for buddies */
814 
815 
816  /* sion_apidesc->barrier_cb(sion_gendata->comm_data_global); */
817 
818  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "leave parallel write buddy\n"));
819 
820 
821 
822  return(rc);
823 }
824 #undef DFUNCTION
825 
826 
835 #define DFUNCTION "_sion_coll_fread_buddy"
836 int _sion_coll_fread_buddy( void *data, size_t size, size_t nitems, int sid) {
837  _sion_filedesc *sion_filedesc,*b_sion_filedesc;
838  _sion_generic_gendata *sion_gendata;
839  _sion_generic_apidesc *sion_apidesc;
840  sion_int64 bread=-1, spec[2], ownnewposition, items_read = 0;
841  int rc_own=SION_STD_SUCCESS,rc_cb=SION_STD_SUCCESS;
842  int collector, firstsender, lastsender, step, b, group;
843  _sion_generic_buddy *buddies;
844  _sion_generic_buddy_info *buddy_info;
845 
846  /* obtain pointers to internal data structures */
847  if ( (sid<0) || (_sion_vcdtype(sid) != SION_FILEDESCRIPTOR) || !(sion_filedesc = _sion_vcdtovcon(sid))) {
848  return(_sion_errorprint(SION_SIZE_NOT_VALID,_SION_ERROR_RETURN,"_sion_coll_fread_buddy: invalid sion_filedesc %d", sid));
849  }
850  DPRINTFP((4, DFUNCTION, _SION_DEFAULT_RANK, "enter usecoll=%d collector=%d collsize=%d (%d tasks, %d files)\n",
851  sion_filedesc->usecoll, sion_filedesc->collector, sion_filedesc->collsize, sion_filedesc->ntasks,sion_filedesc->nfiles));
852 
853  sion_gendata=sion_filedesc->dataptr;
854  sion_apidesc=sion_gendata->apidesc;
855  buddies=sion_filedesc->buddies;
856 
857  /* needed for avoiding subsequent non-collective calls */
858  sion_filedesc->collcmdused=1;
859 
860  /* check collsize */
861  if (sion_filedesc->collsize<=0) {
862  return(_sion_errorprint(SION_SIZE_NOT_VALID,_SION_ERROR_RETURN,"_sion_coll_fread_buddy: collsize=%d <= 0, returning ...\n",
863  (int) sion_filedesc->collsize));
864  }
865 
866 
867  /* loop over all groups */
868  for(step=0;step<buddies->numsteps;step++) {
869  /* search for group with this step */
870  group=-1;
871  for(b=0; ( (b<buddies->numgroups) && (group==-1) ); b++ ) {
872 
873  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "check group #%d of %d %d==%d %x\n",b, buddies->numgroups, buddies->groups[b]->stepnum,step, buddies->groups[b]));
874  if (buddies->groups[b]->stepnum==step) group=b;
875  }
876 
877  if(group!=-1) {
878  /* activity needed for this group */
879 
880  buddy_info=buddies->groups[group];
881 
882  if ( (buddy_info->sid<0) || (_sion_vcdtype(buddy_info->sid) != SION_FILEDESCRIPTOR) || !(b_sion_filedesc = _sion_vcdtovcon(buddy_info->sid))) {
883  return(_sion_errorprint(SION_SIZE_NOT_VALID,_SION_ERROR_RETURN,"_sion_coll_fread_buddy: invalid sion_filedesc %d", buddy_info->sid));
884  }
885 
886  /* parameter of callback function */
887  collector=0;
888  firstsender=buddy_info->from_index;
889  lastsender=buddy_info->to_index;
890 
891 
892  /* check input parameter and position in file */
893  if( (buddy_info->myrole == SION_ROLE_READER)
894  || (buddy_info->myrole == SION_ROLE_COLLECTOR_READER)) {
895 
896  /* ensure to be at the beginning of the right block */
897  if(size*nitems>0) {
898  if(sion_feof(buddy_info->sid)) {
899  _sion_errorprint(SION_SIZE_NOT_VALID,_SION_ERROR_RETURN,"early eof found for this block, returning %d ...\n", buddy_info->sid);
900  spec[0]=spec[1]=-1; /* signaling that no data is requested */
901  } else {
902  /* specification of location in file */
903  spec[0]=sion_filedesc->currentpos;
904  spec[1]=size*nitems;
905  }
906  } else {
907  /* signaling that no data is requested */
908  spec[0]=spec[1]=-1;
909  }
910 
911 
912  }
913 
914 
915  /* read own part */
916  if( (buddy_info->myrole == SION_ROLE_COLLECTOR_READER) ) {
917  rc_own=_sion_generic_collective_process_read(data,spec,buddy_info->sid);
918  firstsender++; /* must not read again */
919  }
920  /* save own position before reading at other positions */
921  if( (buddy_info->myrole == SION_ROLE_COLLECTOR)
922  || (buddy_info->myrole == SION_ROLE_COLLECTOR_READER)) {
923  ownnewposition=sion_filedesc->currentpos;
924  }
925 
926 
927  /* read parts and scatter these to sender tasks via callback function */
928  if(!sion_apidesc->execute_scatter_cb ) {
929  return(_sion_errorprint(SION_SIZE_NOT_VALID,_SION_ERROR_RETURN,
930  "_sion_coll_fread_buddy: API %s not correctly initalized, collective I/O calls missing, aborting",sion_apidesc->name));
931  }
932  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "call execute_gather #%d (step=%d, rank=%d, size=%d, collsize=%d, from=%2d, to=%2d) (bnum=%2d file# %2d) with role %s \n",
933  buddy_info->groupid, buddy_info->stepnum, buddy_info->rank, buddy_info->size, buddy_info->collsize,
934  buddy_info->from_index, buddy_info->to_index, buddy_info->bnum, buddy_info->filenum, _sion_buddy_role_to_str(buddy_info->myrole)));
935 
936  rc_cb=sion_apidesc->execute_scatter_cb(data,spec,2, b_sion_filedesc->fsblksize,
937  buddy_info->commgroup,collector,firstsender,lastsender,buddy_info->sid,
938  _sion_generic_collective_process_read);
939 
940 
941 
942  /* set own position to end of own block read in this call */
943  if( (buddy_info->myrole == SION_ROLE_COLLECTOR)
944  || (buddy_info->myrole == SION_ROLE_COLLECTOR_READER)) {
945  _sion_file_flush(b_sion_filedesc->fileptr);
946  _sion_file_set_position(b_sion_filedesc->fileptr,ownnewposition);b_sion_filedesc->currentpos=ownnewposition;
947  }
948 
949  /* set file pointer in data structure and in file if it is exported and can be used without control of SIONlib */
950  if(buddy_info->myrole == SION_ROLE_READER) {
951  b_sion_filedesc->currentpos+=size*nitems;
952  if(b_sion_filedesc->fileptr_exported) {
953  _sion_file_set_position(b_sion_filedesc->fileptr,b_sion_filedesc->currentpos);
954  }
955  }
956 
957  if( (buddy_info->myrole == SION_ROLE_READER)
958  || (buddy_info->myrole == SION_ROLE_COLLECTOR_READER)) {
959  if( (rc_own == SION_STD_SUCCESS) && (rc_cb == SION_STD_SUCCESS) ) {
960  bread=size*nitems;
961  } else {
962  bread=0;
963  }
964  items_read = size ? bread / size : 0;
965  }
966 
967  } /* froup != -1 */
968 
969  /* barrier between steps */
970  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO beforegbarrier [grank=%2d]\n",sion_gendata->grank));
971  sion_apidesc->barrier_cb(sion_gendata->comm_data_global);
972  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "BUDDYO aftergbarrier [grank=%2d]\n",sion_gendata->grank));
973 
974  } /* for step */
975 
976  DPRINTFP((4, DFUNCTION, _SION_DEFAULT_RANK, "leave usecoll=%d collector=%d collsize=%d (%d tasks, %d files) rc=%d\n",
977  sion_filedesc->usecoll, sion_filedesc->collector, sion_filedesc->collsize, sion_filedesc->ntasks,sion_filedesc->nfiles,items_read));
978 
979  return items_read;
980 
981 }
982 #undef DFUNCTION
983 
984 #define DFUNCTION "_sion_buddy_map"
985 int _sion_buddy_map(
986  _sion_generic_gendata *sion_gendata,
987  int capability,
988  int buddy_idx,
989  _sion_generic_buddy_info *buddy_send,
990  _sion_generic_buddy_info *buddy_coll ) {
991  int rc=SION_SUCCESS;
992  int tmpsize,t,g, g_map, p, p_map, n, n_map, orig, distance,distance_1step,pass;
993  int *size_per_group = NULL, *group_map_orig_to_new, *group_map_new_to_orig, mynewgroupnr;
994  sion_int32 helpint2[2];
995  sion_int32 *tasktogroup = NULL;
996  sion_int32 *tmpintfield1 = NULL;
997  int comm_send_rank, comm_send_size, comm_send_grpnum;
998  int comm_coll_rank, comm_coll_size, comm_coll_grpnum;
999  void *dummycommgroup=NULL;
1000 
1001  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "buddy_idx=%d capability=%d [gendata: grank=%d of %d, group=%d of %d, lrank=%d of %d]\n",
1002  buddy_idx, capability,
1003  sion_gendata->grank, sion_gendata->gsize,
1004  sion_gendata->filenumber, sion_gendata->numfiles,
1005  sion_gendata->lrank, sion_gendata->lsize));
1006 
1007  distance=buddy_idx; /* higher level buddy CP: groups will be remapped to d=1 buddy CP */
1008  distance_1step=1;
1009 
1010  /* allocate some fields */
1011  if(sion_gendata->grank==0) {
1012 
1013  tmpsize=1*sion_gendata->gsize;
1014  tasktogroup = (sion_int32 *) malloc(tmpsize * sizeof(sion_int32));
1015  if (tasktogroup == NULL) {
1016  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_buddy_map: cannot allocate temporary memory of size %lu (tasktogroup), aborting ...\n",
1017  (unsigned long) tmpsize * sizeof(sion_int32)));
1018  }
1019 
1020  tmpsize=2*sion_gendata->gsize;
1021  tmpintfield1 = (sion_int32 *) malloc(tmpsize * sizeof(sion_int32));
1022  if (tmpintfield1 == NULL) {
1023  free(tasktogroup);
1024  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_buddy_map: cannot allocate temporary memory of size %lu (tmpintfield1), aborting ...\n",
1025  (unsigned long) tmpsize * sizeof(sion_int32)));
1026  }
1027 
1028  size_per_group = (int *) malloc(sion_gendata->numfiles * sizeof(int));
1029  if (size_per_group == NULL) {
1030  free(tasktogroup);
1031  free(tmpintfield1);
1032  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_buddy_map: cannot allocate temporary memory of size %lu (size_per_group), aborting ...\n",
1033  (unsigned long) sion_gendata->numfiles * sizeof(int)));
1034  }
1035 
1036  }
1037 
1038  /* on all tasks */
1039  group_map_orig_to_new = (int *) malloc(sion_gendata->numfiles * sizeof(int));
1040  if (group_map_orig_to_new == NULL) {
1041  free(tasktogroup);
1042  _SION_SAFE_FREE(size_per_group, NULL);
1043  free(tmpintfield1);
1044  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_buddy_map: cannot allocate temporary memory of size %lu (group_map_orig_to_new), aborting ...\n",
1045  (unsigned long) sion_gendata->numfiles * sizeof(int)));
1046  }
1047 
1048  group_map_new_to_orig = (int *) malloc(sion_gendata->numfiles * sizeof(int));
1049  if (group_map_new_to_orig == NULL) {
1050  _SION_SAFE_FREE(size_per_group, NULL);
1051  free(group_map_orig_to_new);
1052  free(tasktogroup);
1053  free(tmpintfield1);
1054  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_buddy_map: cannot allocate temporary memory of size %lu (group_map_new_to_orig), aborting ...\n",
1055  (unsigned long) sion_gendata->numfiles * sizeof(int)));
1056  }
1057 
1058  /* Step1: gather group number */
1059  helpint2[0]=sion_gendata->filenumber;
1060  sion_gendata->apidesc->gatherr_cb(helpint2, tasktogroup, sion_gendata->comm_data_global, _SION_INT32,1,0);
1061 
1062 
1063  /* Step2: gather local size */
1064  helpint2[0]=sion_gendata->lsize;
1065  helpint2[1]=capability;
1066  sion_gendata->apidesc->gatherr_cb(helpint2, tmpintfield1, sion_gendata->comm_data_global, _SION_INT32,2,0);
1067  if(sion_gendata->grank==0) {
1068  for(t=0;t<sion_gendata->gsize;t++) {
1069  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "task-map --> t=%2d grpnr=%2d lsize=%2d capability=%d\n",
1070  t,tasktogroup[t],tmpintfield1[2*t+0],tmpintfield1[2*t+1]));
1071  }
1072  /* --> tasktogroup[t] = groupnr, tmpintfield1[t][0] = lsize tmpintfield1[t][1] = capability */
1073  }
1074 
1075  /* Step2: build vector with size info per group and group map */
1076  if(sion_gendata->grank==0) {
1077  for(t=0;t<sion_gendata->gsize;t++) {
1078  size_per_group[tasktogroup[t]] = tmpintfield1[2*t+0];
1079  }
1080  }
1081 
1082  for(g=0;g<sion_gendata->numfiles;g++) {
1083  orig=(g*distance) % sion_gendata->numfiles;
1084  group_map_orig_to_new[orig]=g;
1085  group_map_new_to_orig[g]=orig;
1086  }
1087 
1088  for(g=0;g<sion_gendata->numfiles;g++) {
1089  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "grp-map --> g=%2d->%2d\n",g,group_map_orig_to_new[g]));
1090  }
1091 
1092 
1093  /* Step3: compute send group */
1094  if(sion_gendata->grank==0) {
1095  for(t=0;t<sion_gendata->gsize;t++) {
1096  g=tasktogroup[t];
1097  g_map=group_map_orig_to_new[g];
1098  p_map=(g_map-distance_1step + sion_gendata->numfiles) % sion_gendata->numfiles;
1099  p=group_map_new_to_orig[p_map];
1100  tmpintfield1[2*t+0] = g_map;
1101  tmpintfield1[2*t+1] = size_per_group[p];
1102  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "comm-send --> t=%2d grpnr=%2d grpmap=%2d prevgr=%2d prevgrmap=%2d prev_lsize=%2d\n",
1103  t, g, tmpintfield1[2*t+0], p, p_map, tmpintfield1[2*t+1]));
1104  }
1105  /* --> tmpintfield1[t][0] = own_groupnr, tmpintfield1[t][1] = lsize of prev_group */
1106  }
1107 
1108  /* Step4: scatter info about send group */
1109  sion_gendata->apidesc->scatterr_cb(tmpintfield1, helpint2, sion_gendata->comm_data_global, _SION_INT32,2,0);
1110 
1111  /* Step5: compute ranks for send group */
1112  mynewgroupnr=comm_send_grpnum=helpint2[0];
1113  buddy_send->rank=comm_send_rank=helpint2[1]+sion_gendata->lrank;
1114  buddy_send->size=comm_send_size=helpint2[1]+sion_gendata->lsize;
1115  buddy_send->collsize=sion_gendata->lsize;
1116  buddy_send->groupnum=mynewgroupnr;
1117  buddy_send->filenum=group_map_new_to_orig[mynewgroupnr];
1118  buddy_send->from_index=helpint2[1];
1119  buddy_send->to_index=helpint2[1]+sion_gendata->lsize-1;
1120  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_SEND d=%d grpnum=%2d lrank=%2d lsize=%2d mynewgroupnr=%2d collsize=%2d %d..%d fnum=%d\n",
1121  distance,comm_send_grpnum,comm_send_rank,comm_send_size,mynewgroupnr,
1122  buddy_send->collsize,buddy_send->from_index,buddy_send->to_index,
1123  buddy_send->filenum));
1124 
1125  /* Step6: compute coll group */
1126  if(sion_gendata->grank==0) {
1127  for(t=0;t<sion_gendata->gsize;t++) {
1128  g=tasktogroup[t];
1129  g_map=group_map_orig_to_new[g];
1130  n_map=(g_map+distance_1step) % sion_gendata->numfiles;
1131  n=group_map_new_to_orig[n_map];
1132  tmpintfield1[2*t+0] = n_map;
1133  tmpintfield1[2*t+1] = size_per_group[n];
1134  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "comm-coll --> t=%2d grpnr=%2d grpmap=%2d nextgr=%2d nextgrmap=%2d next_lsize=%2d\n",
1135  t, g, g_map, n, tmpintfield1[2*t+0], tmpintfield1[2*t+1]));
1136  }
1137  /* --> tmpintfield1[t][0] = next_groupnr_map, tmpintfield1[t][0] = lsize of next_group */
1138  }
1139 
1140  /* Step7: scatter info about coll group */
1141  sion_gendata->apidesc->scatterr_cb(tmpintfield1, helpint2, sion_gendata->comm_data_global, _SION_INT32,2,0);
1142 
1143  /* Step8: compute ranks for coll group */
1144  comm_coll_grpnum=helpint2[0];
1145  buddy_coll->rank=comm_coll_rank=sion_gendata->lrank;
1146  buddy_coll->size=comm_coll_size=sion_gendata->lsize+helpint2[1];
1147  buddy_coll->collsize=helpint2[1];
1148  buddy_coll->groupnum=comm_coll_grpnum;
1149  buddy_coll->filenum=group_map_new_to_orig[comm_coll_grpnum];
1150  buddy_coll->from_index=sion_gendata->lsize;
1151  buddy_coll->to_index=sion_gendata->lsize+helpint2[1]-1;
1152  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_COLL d=%d grpnum=%2d lrank=%2d lsize=%2d collsize=%2d %d..%d fnum=%d\n",
1153  distance,comm_coll_grpnum,comm_coll_rank,comm_coll_size,
1154  buddy_coll->collsize,buddy_coll->from_index,buddy_coll->to_index,
1155  buddy_coll->filenum));
1156 
1157  /* Step9: create local communicators for send/coll */
1158 
1159  for(pass=1;pass<=_SION_BW_SCHED_NUM_PASSES;pass++) {
1160  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "pass=%d [grank=%2d] op=%d\n",pass,sion_gendata->grank,
1161  _sion_buddy_bwsched(mynewgroupnr, sion_gendata->numfiles, pass)));
1162 
1163  switch (_sion_buddy_bwsched(mynewgroupnr, sion_gendata->numfiles, pass)) {
1164  case _SION_BW_SCHED_ACTIONA:
1165  rc=sion_gendata->apidesc->create_lcg_cb(&buddy_coll->commgroup,sion_gendata->comm_data_global,
1166  sion_gendata->grank,sion_gendata->gsize,
1167  comm_coll_rank,comm_coll_size,
1168  comm_coll_grpnum,sion_gendata->numfiles);
1169  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_created comm_coll (d=%1d, p=%1d) [gendata: mygrp=%2d grank=%2d of %2d, group=%2d of %2d, lrank=%2d of %2d]\n",
1170  distance,pass,mynewgroupnr,sion_gendata->grank,sion_gendata->gsize,
1171  comm_coll_grpnum,sion_gendata->numfiles,
1172  comm_coll_rank,comm_coll_size ));
1173  break;
1174  case _SION_BW_SCHED_ACTIONB:
1175  rc=sion_gendata->apidesc->create_lcg_cb(&buddy_send->commgroup,sion_gendata->comm_data_global,
1176  sion_gendata->grank,sion_gendata->gsize,
1177  comm_send_rank,comm_send_size,
1178  comm_send_grpnum,sion_gendata->numfiles);
1179  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_created comm_send (d=%1d, p=%1d) [gendata: mygrp=%2d grank=%2d of %2d, group=%2d of %2d, lrank=%2d of %2d]\n",
1180  distance,pass,mynewgroupnr,sion_gendata->grank,sion_gendata->gsize,
1181  comm_send_grpnum,sion_gendata->numfiles,
1182  comm_send_rank,comm_send_size ));
1183  break;
1184  case _SION_BW_SCHED_NOACTION:
1185  rc=sion_gendata->apidesc->create_lcg_cb(&dummycommgroup,sion_gendata->comm_data_global,
1186  sion_gendata->grank,sion_gendata->gsize,
1187  0,1,
1188  -1,sion_gendata->numfiles);
1189  DPRINTFP((256, DFUNCTION, _SION_DEFAULT_RANK, "COMM_created dummy (d=%1d, p=%1d) [gendata: mygrp=%2d grank=%2d of %2d, group=%2d of %2d, lrank=%2d of %2d]\n",
1190  distance,pass,mynewgroupnr,sion_gendata->grank,sion_gendata->gsize,
1191  -1,sion_gendata->numfiles,0,1 ));
1192  break;
1193 
1194  default: break;
1195  }
1196  }
1197 
1198  /* free fields */
1199  if(sion_gendata->grank==0) {
1200  free(tasktogroup);
1201  free(tmpintfield1);
1202  free(size_per_group);
1203  }
1204  free(group_map_new_to_orig);
1205  free(group_map_orig_to_new);
1206 
1207  return(rc);
1208 }
1209 #undef DFUNCTION
1210 
1211  /* pass=1..3 */
1212 #define DFUNCTION "_sion_buddy_bwsched"
1213 int _sion_buddy_bwsched(int groupnr, int numgroups, int pass) {
1214  int res=_SION_BW_SCHED_NOACTION;
1215  if(numgroups%2==0) { /* #groups even */
1216  if(groupnr%2==0) { /* groupnr even */
1217  if(pass==1) res=_SION_BW_SCHED_ACTIONA;
1218  if(pass==2) res=_SION_BW_SCHED_ACTIONB;
1219  } else { /* groupnr even */
1220  if(pass==1) res=_SION_BW_SCHED_ACTIONB;
1221  if(pass==2) res=_SION_BW_SCHED_ACTIONA;
1222  }
1223  } else {
1224  if(groupnr%2==0) { /* groupnr even */
1225  if((pass==1) && (groupnr != (numgroups-1))) res=_SION_BW_SCHED_ACTIONA;
1226  if((pass==2) && (groupnr != 0)) res=_SION_BW_SCHED_ACTIONB;
1227  if((pass==3) && (groupnr == 0)) res=_SION_BW_SCHED_ACTIONB;
1228  if((pass==3) && (groupnr == (numgroups-1))) res=_SION_BW_SCHED_ACTIONA;
1229  } else { /* groupnr even */
1230  if(pass==1) res=_SION_BW_SCHED_ACTIONB;
1231  if(pass==2) res=_SION_BW_SCHED_ACTIONA;
1232  }
1233  }
1234  return(res);
1235 }
1236 #undef DFUNCTION
1237 
1242 #define DFUNCTION "_sion_generic_collect_mapping"
1243 int _sion_generic_collect_mapping_buddy( _sion_generic_buddy *buddyptr,
1244  _sion_generic_gendata *sion_gendata,
1245  int *mapping_size,
1246  sion_int32 **mapping) {
1247  int rc=SION_SUCCESS;
1248  int t;
1249  _sion_generic_apidesc *sion_apidesc;
1250  sion_int32 lpos[2], *receivemap=NULL, iamreceiver, receiver = -1;
1251 
1252  sion_apidesc=sion_gendata->apidesc;
1253 
1254  *mapping = NULL; *mapping_size = 0;
1255 
1256 
1257  /* mapping data will be collected by master of first physical file */
1258  if((buddyptr->buddy_coll.groupnum==0) && (buddyptr->buddy_coll.rank==0)) {
1259  /* allocate data */
1260  *mapping_size=sion_gendata->gsize;
1261  *mapping = (sion_int32 *) malloc(*mapping_size * 2 * sizeof(sion_int32));
1262  if (*mapping == NULL) {
1263  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_generic_collect_mapping_buddy: Cannot allocate memory for mapping"));
1264  }
1265  }
1266 
1267  /* gather info about send about global rank of master of first file on grank 0 */
1268  if(sion_gendata->grank==0) {
1269  receivemap = (sion_int32 *) malloc(sion_gendata->gsize * sizeof(sion_int32));
1270  if (receivemap == NULL) {
1271  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_generic_collect_mapping_buddy: Cannot allocate memory for receivemap"));
1272  }
1273  }
1274 
1275  if((buddyptr->buddy_coll.filenum==0) && (buddyptr->buddy_coll.rank==0)) iamreceiver=sion_gendata->grank;
1276  else iamreceiver=-1;
1277  sion_apidesc->gatherr_cb(&iamreceiver, receivemap, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
1278  if(sion_gendata->grank==0) {
1279  for(t=0;t<sion_gendata->gsize;t++) {
1280  if(receivemap[t]>=0) {
1281  receiver=receivemap[t];
1282  break;
1283  }
1284  }
1285  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "receiver of mapping grank=%d\n", receiver));
1286  }
1287  sion_apidesc->bcastr_cb(&receiver, sion_gendata->comm_data_global, _SION_INT32, 1, 0);
1288 
1289  /* receive global rank of master of first file on grank 0 */
1290  lpos[0] = buddyptr->buddy_send.filenum;
1291  lpos[1] = buddyptr->buddy_send.rank;
1292  sion_apidesc->gatherr_cb(&lpos, *mapping, sion_gendata->comm_data_global, _SION_INT32, 2, receiver);
1293 
1294  if(receivemap!=NULL) free(receivemap);
1295 
1296  return(rc);
1297 }
1298 #undef DFUNCTION
1299 
1300 
1301 #define DFUNCTION "_sion_generic_buddy_get_and_distribute_info_from_file"
1302 int _sion_generic_buddy_get_and_distribute_info_from_file( _sion_generic_gendata *sion_gendata, char *fname, int root,
1303  sion_int32 *filenumber, sion_int32 *numfiles,
1304  sion_int32 *lrank, sion_int32 *lsize) {
1305 
1306  int sid = -1, ntasks, nfiles, t;
1307  int rc = SION_SUCCESS;
1308  FILE *fileptr;
1309  sion_int32 fsblksize;
1310  int *tasksinfile = NULL;
1311  int mapping_size = -1;
1312  sion_int32 *mapping = NULL;
1313  sion_int32 lpos[2];
1314  _sion_generic_apidesc *sion_apidesc;
1315 
1316  sion_apidesc=sion_gendata->apidesc;
1317 
1318  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "entering function sion_gendata->grank=%d\n",sion_gendata->grank));
1319 
1320  if(sion_gendata->grank == root) {
1321  /* open and get mapping of sion file */
1322  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "before open\n"));
1323  sid=_sion_open_read(fname,_SION_FMODE_READ|_SION_FMODE_ANSI,_SION_READ_MASTER_ONLY_OF_MULTI_FILES,
1324  &ntasks,&nfiles,NULL,&fsblksize,NULL,&fileptr);
1325  if(sid>=0) {
1326  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "after open\n"));
1327  rc=sion_get_mapping(sid,&mapping_size,&mapping,numfiles);
1328  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "sion file %d files\n", *numfiles));
1329  } else {
1330  *numfiles=-1;
1331  }
1332  }
1333 
1334 
1335  /* each task has to know if more than one file was used in sion file */
1336  sion_apidesc->bcastr_cb(numfiles, sion_gendata->comm_data_global, _SION_INT32, 1, root);
1337  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "%s: numfiles=%d\n",fname,*numfiles));
1338 
1339  if((sion_gendata->grank == root) && (*numfiles>1)) {
1340  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "%s: mapping_size=%d sion_gendata->gsize=%d\n",fname,*numfiles,mapping_size,sion_gendata->gsize));
1341  if(mapping_size!=sion_gendata->gsize) {
1342  return(_sion_errorprint(SION_NOT_SUCCESS,_SION_ERROR_RETURN,
1343  "_sion_generic_buddy_get_and_distribute_info_from_file: Incorrect sum of ntasks of files %d <> %d\n",
1344  mapping_size, sion_gendata->gsize));
1345  }
1346  }
1347 
1348  if(*numfiles<0) {
1349  return(_sion_errorprint(SION_NOT_SUCCESS,_SION_ERROR_RETURN,
1350  "_sion_generic_buddy_get_and_distribute_info_from_file: could not get numfiles from sion file\n"));
1351  }
1352 
1353  if(*numfiles>1) {
1354  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "before scatter\n"));
1355  if(sion_gendata->grank==root) {
1356  for(t=0;t<mapping_size;t++) {
1357  DPRINTFP((1, DFUNCTION, sion_gendata->grank, " %d -> (%d,%d)\n",t,mapping[t*2],mapping[t*2+1]));
1358  }
1359  }
1360 
1361  /* scatter mapping to all tasks */
1362  sion_apidesc->scatterr_cb(mapping, lpos, sion_gendata->comm_data_global, _SION_INT32, 2, root);
1363  *filenumber=lpos[0];
1364  *lrank =lpos[1];
1365  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "after scatter filenum+lrank (%d,%d)\n",*filenumber,*lrank));
1366 
1367  /* compute and scatter number of tasks in each file */
1368  if(sion_gendata->grank==root) {
1369  tasksinfile = (int *) malloc(*numfiles * sizeof(int));
1370  if (tasksinfile == NULL) {
1371  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_generic_get_and_distribute_info_from_file: Cannot allocate memory for tasksinfile counter vector"));
1372  }
1373  for(t=0;t<*numfiles;t++) tasksinfile[t]=0; /* init counter */
1374  for(t=0;t<mapping_size;t++) tasksinfile[ mapping[t*2] ]++; /* count tasks in file */
1375  for(t=0;t<mapping_size;t++) mapping[t*2+1]=tasksinfile[ mapping[t*2] ]; /* set 2nd value of mapping to lsize */
1376  }
1377  sion_apidesc->scatterr_cb(mapping, lpos, sion_gendata->comm_data_global, _SION_INT32, 2, root);
1378  *lsize =lpos[1];
1379  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "after scatter lsize (%d, %d of %d)\n",*filenumber, *lrank, *lsize));
1380 
1381  if(sion_gendata->grank==root) {
1382  if(tasksinfile) free(tasksinfile);
1383  }
1384  /* WARNING: mapping file of sion file is now destroyed and should not be used until close */
1385 
1386  } else {
1387  *filenumber=0;
1388  *lrank = sion_gendata->grank;
1389  *lsize = sion_gendata->gsize;
1390  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "only one file -> filenumber=%d lRank=%d\n",*filenumber,*lrank));
1391  }
1392 
1393  if(sion_gendata->grank == root) {
1394  /* frees also mapping vector */
1395  if (sid>=0) _sion_close_sid(sid);
1396  }
1397 
1398  return(rc);
1399 }
1400 #undef DFUNCTION
1401 
1402 
1403 #define DFUNCTION "_sion_generic_buddy_get_and_distribute_info_from_one_file"
1404 int _sion_generic_buddy_get_and_distribute_info_from_one_file( _sion_generic_gendata *sion_gendata, char *fname, int root,
1405  sion_int32 *filenumber, sion_int32 *numfiles,
1406  sion_int32 *lrank, sion_int32 *lsize) {
1407 
1408  int rc = SION_SUCCESS;
1409  int t, mapping_size = 0, grank, *mapping = NULL;
1410  sion_int32 file_filenumber,file_numfiles,file_lrank,file_lsize;
1411  _sion_filedesc *sion_filedesc = NULL;
1412  _sion_fileptr *sion_fileptr;
1413  _sion_generic_apidesc *sion_apidesc;
1414 
1415  sion_apidesc=sion_gendata->apidesc;
1416 
1417  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "entering function sion_gendata->grank=%d\n",sion_gendata->grank));
1418 
1419  if(sion_gendata->grank == root) {
1420  /* open and get globalranks of sion file */
1421  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "before open\n"));
1422  /* allocate and initialise internal data structure with default values (NULL and -1) */
1423  sion_filedesc = _sion_alloc_filedesc();
1424  if (sion_filedesc == NULL) {
1425  return(_sion_errorprint(SION_ID_UNDEF,SION_ID_UNDEF,
1426  "sion_open: cannot allocate filedescriptor structure of size %lu (sion_filedesc), aborting ...\n",
1427  (unsigned long) sizeof(sion_filedesc)));
1428  }
1429  _sion_init_filedesc(sion_filedesc);
1430 
1431  /* open file */
1433  if (!sion_fileptr) {
1434  return(_sion_errorprint(SION_ID_UNDEF,_SION_ERROR_RETURN,"sion_open: cannot open %s for reading, aborting ...\n", fname));
1435  }
1436  sion_filedesc->fileptr = sion_fileptr;
1437 
1438  /* read part of header which does not depend on ntasks */
1439  rc = _sion_read_header_fix_part(sion_filedesc);
1440  if (rc!=SION_SUCCESS) {
1441  return(_sion_errorprint(SION_ID_UNDEF,_SION_ERROR_RETURN,"sion_open: cannot read header from file %s, aborting ...\n", fname));
1442  }
1443  sion_filedesc->rank = 0;
1444  sion_filedesc->state = SION_FILESTATE_SEROPEN;
1445  sion_filedesc->mode = SION_FILEMODE_READ;
1446 
1447  /* memory allocation for internal fields */
1448  _sion_alloc_filedesc_arrays(sion_filedesc);
1449 
1450  /* read part of header which depends on ntasks */
1451  rc = _sion_read_header_var_part(sion_filedesc);
1452  if (rc!=SION_SUCCESS) {
1453  return(_sion_errorprint(SION_ID_UNDEF,_SION_ERROR_RETURN,"sion_open: cannot read header (var part) from file %s, aborting ...\n", fname));
1454  }
1455 
1456  file_numfiles=sion_filedesc->nfiles;
1457  file_filenumber=sion_filedesc->filenumber;
1458  file_lsize=sion_filedesc->ntasks;
1459 
1460  /* allocate mapping vector */
1461  mapping_size=sion_gendata->gsize;
1462  mapping = (sion_int32 *) malloc(mapping_size * 2 * sizeof(sion_int32));
1463  if (mapping == NULL) {
1464  return(_sion_errorprint(SION_ID_NOT_VALID,_SION_ERROR_RETURN,"_sion_generic_buddy_get_and_distribute_info_from_one_file: cannot allocate temporary memory of size %lu (mapping), aborting ...\n",
1465  (unsigned long) mapping_size * 2 * sizeof(sion_int32)));
1466  }
1467 
1468  }
1469 
1470 
1471  /* each task has to know some number about local file */
1472  sion_apidesc->bcastr_cb(&file_numfiles, sion_gendata->comm_data_global, _SION_INT32, 1, root);
1473  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "%s: numfiles=%d\n",fname,file_numfiles));
1474  sion_apidesc->bcastr_cb(&file_filenumber, sion_gendata->comm_data_global, _SION_INT32, 1, root);
1475  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "%s: filenumber=%d\n",fname,file_filenumber));
1476  sion_apidesc->bcastr_cb(&file_lsize, sion_gendata->comm_data_global, _SION_INT32, 1, root);
1477  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "%s: file_lsize=%d\n",fname,file_lsize));
1478 
1479 
1480  if(file_numfiles!=*numfiles) {
1481  _SION_SAFE_FREE(mapping, NULL);
1482  return(_sion_errorprint(SION_NOT_SUCCESS,_SION_ERROR_RETURN,
1483  "_sion_generic_buddy_get_and_distribute_info_from_one_file: Incorrect number of files %d <> %d\n",
1484  file_numfiles,*numfiles));
1485  }
1486 
1487  /* init mapping vector lrank */
1488  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "before scatter\n"));
1489  if(sion_gendata->grank==root) {
1490  for(t=0;t<mapping_size;t++) mapping[t]=-1;
1491  for(t=0;t<file_lsize;t++) {
1492  grank=sion_filedesc->all_globalranks[t];
1493  if(grank>=0) {
1494  mapping[grank]=t;
1495  DPRINTFP((1, DFUNCTION, sion_gendata->grank, " file=%s mapping[%d] -> (%d)\n",fname,grank,mapping[grank]));
1496  }
1497  }
1498  }
1499 
1500  /* scatter mapping to all tasks */
1501  sion_apidesc->scatterr_cb(mapping, &file_lrank, sion_gendata->comm_data_global, _SION_INT32, 1, root);
1502  if(file_lrank!=-1) {
1503  *filenumber=file_filenumber;
1504  *lrank =file_lrank;
1505  *lsize =file_lsize;
1506  DPRINTFP((1, DFUNCTION, sion_gendata->grank, "after scatter filenum=%d lrank=%d lsize=%d\n",*filenumber,*lrank,*lsize));
1507  }
1508 
1509  if(sion_gendata->grank == root) {
1510  /* close current file */
1511  _sion_free_filedesc_arrays(sion_filedesc);
1512  _sion_file_close(sion_filedesc->fileptr);
1513  sion_filedesc->fileptr=NULL;
1514  free(mapping);
1515  }
1516 
1517  return(rc);
1518 }
1519 #undef DFUNCTION
int sion_feof(int sid)
Function that indicates whether the end of file is reached for this task.
Definition: sion_common.c:809
sion_int64 _sion_file_set_position(_sion_fileptr *sion_fileptr, sion_int64 startpointer)
Set new position in file.
Definition: sion_file.c:219
_sion_fileptr * _sion_file_open(const char *fname, unsigned int flags, unsigned int addflags)
Create and open a new file for writing.
Definition: sion_file.c:42
Sion File Descriptor Structure.
Definition: sion_filedesc.h:79
int sion_ensure_free_space(int sid, sion_int64 bytes)
Funtion to ensure that enough space is available for writing.
Definition: sion_common.c:1053
int _sion_paropen_generic_one_file(int sid, char *fname, _sion_flags_store *flags_store, char *prefix, int *numFiles, int *filenumber, sion_int64 *chunksize, sion_int32 *fsblksize, int rank, int ntasks, int *globalrank, int flag, FILE **fileptr, _sion_generic_gendata *sion_gendata, _sion_generic_buddy *buddy_data)
Generic parallel open of one direct access file.
int _sion_parclose_generic(int sid, int rank, int ntasks, int mapping_size, sion_int32 *mapping, int flag, _sion_generic_gendata *sion_gendata, _sion_generic_buddy *buddy_data)
Internal function to close parallel opened SION file.
int _sion_read_header_var_part(_sion_filedesc *sion_filedesc)
Read the second part of SION Meta Block 1.
#define SION_FILESTATE_SEROPEN
Definition: sion_filedesc.h:29
sion_int64 * all_globalranks
int _sion_alloc_filedesc_arrays(_sion_filedesc *sion_filedesc)
Allocate memory for the internal sion arrays.
int _sion_free_filedesc_arrays(_sion_filedesc *sion_filedesc)
free memory for the internal sion arrays
#define SION_FILE_FLAG_READ
Definition: sion_file.h:27
int _sion_vcdtype(int sid)
Definition: sion_fd.c:58
sion_int32 fileptr_exported
#define SION_FILE_FLAG_POSIX
Definition: sion_file.h:24
int sion_get_mapping(int sid, int *mapping_size, sion_int32 **mapping, int *numfiles)
Returns pointers to the internal field mapping.
Definition: sion_common.c:219
void * _sion_vcdtovcon(int sid)
Definition: sion_fd.c:53
#define SION_FILEMODE_READ
Definition: sion_filedesc.h:37
int _sion_file_close(_sion_fileptr *sion_fileptr)
Close file and destroys fileptr structure.
Definition: sion_file.c:109
int _sion_newvcd(void *data, int type)
Definition: sion_fd.c:43
int _sion_read_header_fix_part(_sion_filedesc *sion_filedesc)
Read part of the SION Meta Block 1.
char * _sion_get_multi_filename(const char *fname, int filenumber)
generates the multi filename
#define SION_FILEDESCRIPTOR
Definition: sion_fd.h:17
_sion_filedesc * _sion_alloc_filedesc(void)
Allocates memory for internal sion structure.
int _sion_init_filedesc(_sion_filedesc *sion_filedesc)
Initialize the sion file description.
Definition: sion_filedesc.c:37
#define SION_FILEMODE_WRITE
Definition: sion_filedesc.h:38
int _sion_file_stat_file(const char *fname)
Check if file exists (LARGE_FILE support on BlueGene)
Definition: sion_file.c:205
Sion Time Stamp Header.
int _sion_file_flush(_sion_fileptr *sion_fileptr)
Flush data to file.
Definition: sion_file.c:263
_sion_fileptr * fileptr
Definition: sion_filedesc.h:82
int _sion_open_read(const char *fname, sion_int64 file_mode_flags, int read_all, int *ntasks, int *nfiles, sion_int64 **chunksizes, sion_int32 *fsblksize, int **globalranks, FILE **fileptr)
internal sion serial open function for reading on one or more files